Gene VSAL_I2276 details

Gene Information

• Locus tag: VSAL_I2276
• Symbol: ccmF
• ID: 6988427
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2450835
• End bp: 2452793
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643380554
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_002263638
• Protein GI: 209695708
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCCAG AACTCGGTCA TTTTGCGATG ATTGCCTCAT TAGGACTTGC TGTCCTATTG 
AGTATATTGC CTATGTACGG TGCAAGCCGT GGCAATAAAG CATTAATGCA AAGTGCAAGA 
CCTCTCGCTT GGGGGATGTT CCTACTCCTC AGTTTATCAT TTGGGATCTT AATGTGGGCA 
TTCTACGTTA ACGATTTCAC TCTCCAATAC GTCGCAAGTA ACTCAAACAG TTTACTGCCT 
TGGTATTATC GTTTAACGGC GGTGTGGGGG GCTCATGAAG GTTCATTGCT TCTTTGGGTA 
TTAATTCAAG CAGGTTGGAC TGTGGCTGTA GCGACATTTA GTCGTGGTAT GCCTCAAGAG 
TCTGTTGCTC GAGTATTGGC AGTGATGGGC TGGATTACCC TTGGTTTCTT ACTGTTTATC 
ATTTTAACAT CGAACCCATT TTTACGTACT CTGCCATTTT TTCCAATTGA TGGACGTGAT 
TTAAACCCAT TACTTCAAGA TCCTGGGTTG ATCATTCATC CACCAATGCT TTATATGGGC 
TACGTTGGTT TCTCTGTTGC GTTCTCATTT GCTATTGCGT CATTAATGAC GGGTCGATTA 
GATACTGCAT GGGCTCGTTG GTCTCGTCCT TGGACGATTG CTGCATGGTC ATTTCTAACC 
GTAGGTATCT CTCTAGGTTC GTGGTGGGCA TATTATGAAC TTGGCTGGGG TGGTTGGTGG 
TTCTGGGATC CAGTAGAAAA CGCATCATTC ATGCCTTGGC TTGTTGGTAC CGCATTAATG 
CACTCATTAG CGGTAACCGA GAAACGTGGT ACGTTTAAAG CTTGGACCGT TCTACTTGCA 
ATATCAGCAT TCTCATTAAG TTTATTAGGT ACGTTCCTTG TTCGTTCTGG CATCTTGGTA 
TCGGTTCATG CCTTTGCTTC TGATCCCGCT CGAGGCATGT TCATCCTTGC CTTCTTAGTG 
ATGGTTATCG GTGGTTCATT ACTGCTGTTT GCTTTAAAAG GTTCTTCAGT TCGTGTTCGT 
GGTAATTTTG CTCTCTTTTC TCGTGAAAAT GCATTATTAG CCAATAATAT TTTATTAATA 
ACGGCTTTAG TTGTTGTTCT TGTTGGTACG TTATTACCCT TAGTACATAA GCAACTTGGT 
TTAGGCTCAG TCTCAATCGG TGCACCGTTC TTCGATATGC TATTTGCATG GTTGATGATC 
CCATTTGCAT TTTTATTGGG TATTGGTCCT CTGATCCGTT GGAAGAAAGA TAATTTAAAT 
AGTCTTGTTA AACGTATGGT AATCACAGGA GCGGTAACCG TTCCTCTTGC TGCTGTAATG 
ATGGTTATCT TTGCAGATAA GTTCCTATTT ATGGCTTACC TAGGTTGGAT GATGTCAATT 
TGGATCATTA TTCTTCATGG TTTTGAAATG TATGAACGTG CAACTCACCG TCATACACTT 
GCTGTTGGTT TAACGAAACT TGGCCGCAGT CATTGGGCGA TGGTATCTGC ACATATCGGT 
CTTGCTATTA CGATTATCGG TATTGCAATG GTACAAAACT ACAGTATTGA AAAAGACGTA 
CGTTTGGCAC CTGGTGAGCA CATTGAAATG AATGGCTACC AATTCTACTT TGCTGGCATT 
CGTGATACTG ATGGTCCTAA CTATGATGGT TATACCGCTG ATTTTGATAT TTCGTTAGAT 
GGTAAAGCCA TCAATACATT ACATGCTGAA AAACGTTTCT ACGCAACGTC TGGAGCGATG 
ATGACGGAAG CGGCGATTGA CCGTGGCATT ACTCGTGATC TATACATTGC GATGGGTGAG 
CGTTTAGATG ACAACCGTTC ATGGGCTGTA CGTATTTATT ACAAACCGTT CGTTCGTTGG 
ATCTGGGCTG GTACTCTATT CATGGCATTA GGCGGTGTGT TAGCAATGTC TGATAAGCGT 
TACCGTTTCC GTAAAACATC GAAAAAACAG GAGGCATAA 

 

Protein sequence

MIPELGHFAM IASLGLAVLL SILPMYGASR GNKALMQSAR PLAWGMFLLL SLSFGILMWA 
FYVNDFTLQY VASNSNSLLP WYYRLTAVWG AHEGSLLLWV LIQAGWTVAV ATFSRGMPQE 
SVARVLAVMG WITLGFLLFI ILTSNPFLRT LPFFPIDGRD LNPLLQDPGL IIHPPMLYMG 
YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTIAAWSFLT VGISLGSWWA YYELGWGGWW 
FWDPVENASF MPWLVGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV 
SVHAFASDPA RGMFILAFLV MVIGGSLLLF ALKGSSVRVR GNFALFSREN ALLANNILLI 
TALVVVLVGT LLPLVHKQLG LGSVSIGAPF FDMLFAWLMI PFAFLLGIGP LIRWKKDNLN 
SLVKRMVITG AVTVPLAAVM MVIFADKFLF MAYLGWMMSI WIIILHGFEM YERATHRHTL 
AVGLTKLGRS HWAMVSAHIG LAITIIGIAM VQNYSIEKDV RLAPGEHIEM NGYQFYFAGI 
RDTDGPNYDG YTADFDISLD GKAINTLHAE KRFYATSGAM MTEAAIDRGI TRDLYIAMGE 
RLDDNRSWAV RIYYKPFVRW IWAGTLFMAL GGVLAMSDKR YRFRKTSKKQ EA