| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2243 |
|---|
| Symbol | |
|---|
| ID | 6988467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2413782 |
|---|
| End bp | 2414588 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643380525 |
|---|
| Product | 4-amino-4-deoxychorismate lyase |
|---|
| Protein accession | YP_002263608 |
|---|
| Protein GI | 209695679 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000604374 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATTGGG TTAACGGGGT AGTTACGGAT TCATTACCAC TCACTGATCG TAGTATTCAA
TATGGTGATG GTTCTTTTAC GACCATGAAA GTTGAGCGGG GGAGAGTCCG TTTATGGGAC
TTGCACTTAG CTCGTTTAAA AGAAGCGTCA AAACGATTAG ACATCAAGAT TGAAGATTGG
CTTCTTCTTG AAACGCAAAT TGAATCTTGC GCCCATGAGC TTCAAGATGG TGGCATTAAG
ATACTGATCA GTCGAGGGAG TGGTGGACGA GGTTATTCTC CTGAGGGCTG CCATGATACA
CAAATTATTG TGTCGACTTT TTCTTATCCA ACGTATTATC AGAATTGGAA AGAAGGCGGT
ATTAGTTTGA TGCTTTGTGA AACCCAGTTA GGGTTGTCAC CATTACTTGC AGGTATGAAG
CATACAAACC GATTAGAACA AGTTTTGATT AAGAAAGAAA TAGCAAAAAC AACGTATCTT
GATGGCGTGG TTCTTGATCT TAATAACAAA GTTATAGAGA CTTCAATAGG CAATATTTTT
TGGGTGAAGG GTGATAATAT TTACACCCCT AATTTATCAA ACTCTGGTGT TGAAGGTGTG
ATGAAAGCAC ACATTTATGC ATTGGCTAAT TTACATGGGC TAACGTTGTT CGAAACATCA
ATTTATGTAG ACGAACTATG CATGGCCGAT GAAGTTTTTA TTAGTAATTC ATTATTTGAA
ATAGTGCCAA TTAACGCAAT TGGCAATACG ACTTTTGACA GTCATAAGTT GTCTCATTGG
TTTCAGGAGA AATTGTACTC GTGCTAA
|
|---|
| Protein sequence | MYWVNGVVTD SLPLTDRSIQ YGDGSFTTMK VERGRVRLWD LHLARLKEAS KRLDIKIEDW
LLLETQIESC AHELQDGGIK ILISRGSGGR GYSPEGCHDT QIIVSTFSYP TYYQNWKEGG
ISLMLCETQL GLSPLLAGMK HTNRLEQVLI KKEIAKTTYL DGVVLDLNNK VIETSIGNIF
WVKGDNIYTP NLSNSGVEGV MKAHIYALAN LHGLTLFETS IYVDELCMAD EVFISNSLFE
IVPINAIGNT TFDSHKLSHW FQEKLYSC
|
|---|
| |