| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2234 |
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| Symbol | rluC |
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| ID | 6989130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2405765 |
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| End bp | 2406712 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643380516 |
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| Product | ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C) |
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| Protein accession | YP_002263599 |
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| Protein GI | 209695670 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0928032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAG ATAAACCTAA AGTGCAATTC GTCGAAATAG ATGACGATTT TGCAGGGCAA
CGAATCGATA ACTATCTTCT TGCCCGCTTA AAAAATGTAC CAAAAAGTAT GATTTACCGA
ATTGTCCGTA AAGGCGAAGT TCGTGTAAAT AAAAAACGCA TCAAACCAGA GTATAAAATT
CAAGAGGGGG ATATAGTTCG AATTCCTCCA GTGAAGTTAC CTGAATCAAC AGCTGTAGAG
CTACCTAGTG TTAAATTAGC CAAAGTATCT GAACTTGAGA GTTGCATCAT ATATGAAGAT
GATCATCTTC TTATTTTGAA TAAACCTTCT GGTACCGCTG TTCATGGTGG CAGTGGTTTG
AAGTTTGGAG CAATCGAAGC GTTAAGAGCG TTACGCCCTG ATGCACGCTA TTTAGAATTA
GTGCATCGAA TTGATAGAGA TACGTCTGGT ATTCTTTTAA TTGCAAAAAA ACGTTCGGCT
TTACGTCGAT TACAAGAACA ATTCAGAAAT AAAACCGTTC AAAAATATTA TTTTGCTTTG
GTTATGGGAC ATTGGAAGAG CACCTGTAAA GTGGTTAATG TTCCTTTGCT TAAAAACGAA
GTGAACAGTA TTGTACGTGT TAATCCAAAT GGTAAGCCTT CTGAAACTCG TTTTAAAATT
TTAGAAAAAT TTGAGCAAGC GACATTGATT CAGGCAAGCC CAATTACAGG GCGTACTCAT
CAAATTCGTG TACATGCTCA ACATGCTGGT CACCCAATTG GTTGGGATGA TCGCTATGGC
GATAGACGAT TTGATGCCTA TACGGGTCAA TTTGGTCTTG ATCGACTTTT CTTACATGCA
GCGAATATTA AATTTACTCA CCCAAGTACT GAAGAGTTGA TGGATATTAG CGCGCCGATG
GAAAAACGAT TAGAAAGAGT ATTAACCGGT TTACGCACGA CAAAGTAA
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| Protein sequence | MTEDKPKVQF VEIDDDFAGQ RIDNYLLARL KNVPKSMIYR IVRKGEVRVN KKRIKPEYKI
QEGDIVRIPP VKLPESTAVE LPSVKLAKVS ELESCIIYED DHLLILNKPS GTAVHGGSGL
KFGAIEALRA LRPDARYLEL VHRIDRDTSG ILLIAKKRSA LRRLQEQFRN KTVQKYYFAL
VMGHWKSTCK VVNVPLLKNE VNSIVRVNPN GKPSETRFKI LEKFEQATLI QASPITGRTH
QIRVHAQHAG HPIGWDDRYG DRRFDAYTGQ FGLDRLFLHA ANIKFTHPST EELMDISAPM
EKRLERVLTG LRTTK
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