| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2204 |
|---|
| Symbol | rluE |
|---|
| ID | 6987656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2368327 |
|---|
| End bp | 2368959 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643380486 |
|---|
| Product | ribosomal large subunit pseudouridine synthase E |
|---|
| Protein accession | YP_002263570 |
|---|
| Protein GI | 209695641 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCA AGCGTTCTCC AAATTGGAAA AAACCGGCCT TTAAGAAAAA AACCACACAA
AAGCCACGCC CTGCACCAGA AGATCGTAAA GTCCTTATCT TTAATAAACC TTTTGATGTA
TTGAGTCAAT TTACCGATGA TCAGCATCGA CAAACTCTTG CAGATTTCAT TTCTGTGAAG
GATGTTTACG CAGCAGGACG CCTTGATCGT GACAGTGAAG GATTATTAAT TCTTACCAAT
GATGGTGTGC TTCAAGCACG GTTAACACAA CCTGAATCTA AGTCACCAAA AACCTATTGG
GTACAAGTTG AAGGTGCTCC GACAGAAGAC GATTTAGAGA AGCTTCGCCA AGGCGTTGAA
TTAAAAGATG GGATGACACT TCCCGCAAAA GTTGAAGTAA TGACAGAGCC TGAACTATGG
GAAAGAAACC CTCCCGTTCG CTTTAGAGCA GCGATTCCGA CAACATGGAT AGCAGTGACT
ATTATTGAAG GAAGAAACAG ACAAGTTCGC CGAATGACGG CTCACATTGG GTTTCCAACG
TTACGCTTGA TTCGTTACTC TATGGGAGAT TGGACGATCA AAGATGTCCC TCATCGAGAA
TGGAAAGAAG TGACAATTAA TAGTAATAAA TAG
|
|---|
| Protein sequence | MTFKRSPNWK KPAFKKKTTQ KPRPAPEDRK VLIFNKPFDV LSQFTDDQHR QTLADFISVK
DVYAAGRLDR DSEGLLILTN DGVLQARLTQ PESKSPKTYW VQVEGAPTED DLEKLRQGVE
LKDGMTLPAK VEVMTEPELW ERNPPVRFRA AIPTTWIAVT IIEGRNRQVR RMTAHIGFPT
LRLIRYSMGD WTIKDVPHRE WKEVTINSNK
|
|---|
| |