Gene VSAL_I2157 details

Gene Information

• Locus tag: VSAL_I2157
• Symbol: sppA
• ID: 6988476
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2317002
• End bp: 2318855
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380443
• Product: protease IV (endopeptidase IV)
• Protein accession: YP_002263527
• Protein GI: 209695598
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGGGT TATTCCACTT CATAAGTAAA TGTTTTCAGG CGATATGGAA GTTACTTTCC 
TTTACTCGTC AGCTAGTACT TAATTTGTTT TTCTTGGCTT TTATCGGTGT CATTGCTTTT 
ACTTTTTTAA GCACCGATGA TATTCAACAA GATCAAACCG TTGAGAAAAA AGCACTCATT 
CTGGATCTCT CTGGCCCAAT TGTTGAAGAA AGTAAATTCA GAGAGCCACT AGAACGCGTT 
ACGGCCGATT TACTCGGTAG CCAACGATCA CAAGAAAACG TCTTATTCGA TATCGTAGAT 
ACAATTCGCT ATGCCGCTAA AGATGATAAT GTGTCAGGTT TAGTTCTTCA TTTAAAAGAA 
ATGAATGAAA CAAGTCTAAC TAAATTGCGT TATATCGCAA AAGCCATCAA TACATTTAAA 
GCGTCTGGTA AACCCGTCTA TGCCATCGGT GATTATTACA ACCAAAGCCA ATACTATTTA 
GCAAGTTACG CTGACAAAAT TTTTATGGCT CCTGACGGCG CAGTCTTATT ACGTGGCTAC 
GGAGCTTACA CTCTGTACTA CAAAGATTTA TTAGAAAAAC TCAATGTATC GACACACGTT 
TTTCGCGTAG GTACTTATAA ATCAGCCGTA GAACCTTACT TACGTAATGA CATGTCTGAT 
GCTGCTAAAG CATCCACGTC AGCATGGCTA ACTCAGCTTT GGGATGCGTA TTTAGGTGAT 
GTCTCAACCA ATCGCCAAAT TGACGCAAAA ACATTAACGA TGCCAATGGA TCAGTTTATT 
GCAAAATTGA CGGCATTAAA TGGTGATTTA TCACAAATGA CGGTGGAACT TGGTTTAGTT 
GACAAGCTCG CTACTCGTCA AGAAGTTCGT AAAGACCTTA TTACTGAATT TGGGTCAAAT 
GGTTATGATA GCTTTAAACA AATAAGCTAT TACGATTATC TCCCTCAAGT TCACCCTTCG 
ATTATCCCTG ATGCAAAAGA CATTGCTGTT GTTGTCGCTA GTGGCGCAAT TATGGATGGA 
ACTCAACGTC AAGGTACTGT CGGAGGCGAT TCAACTGCCG CATTATTACG CCAAGCTCGT 
GATGATGATA ATGTGAAAGC TGTCGTTTTG AGAGTAGATA GCCCAGGAGG CAGTGCTTTT 
GCTTCTGAAA TTATTCGTAA CGAAGTTGAT GCTCTACAAG AAGCAGGTAA GCCTGTTGTT 
ATTTCTATGT CGAGTGTCGC TGCCTCTGGT GGTTATTGGA TCTCCGCAAG TGCTGATAAG 
ATCATTGCTC AACCAACAAC GATTACTGGC TCTATTGGTA TTTTTGGTAT TTTAACCACT 
TTTGAAAAAG GGTTAGAAAA AATGGGTATC CACAGCGATG GCATTTCGAC ATCACCTTTC 
AATGGCATTG GCCTTACTCG CCCGCTTGAT AAAGACGTTG CTCAAGTCAT GCAATTAGGT 
ATTGAACATG GTTATTACCG ATTCATTAAA TTAGTCAGTG ATCATCGTGA TATGTCTTTA 
GATGCCGTTG ATAATGTCGC TCAAGGTCGA GTATGGACAG GGAAAGATGC CCTTGAACAT 
GGTTTGATTG ACCAGCTAGG GGATTTTGAT GATGCTGTTC AAGCTGCGGC TGAGCTCGCC 
AATATGGACG CATATAATCT GTTTTGGGTA AAAGAACCAT TAACACCGAT GGAACAATTT 
CTTGAAGAGT TAAGCATGAG CTTAAATGTC AGTGTAAAAG CTGAATTATT TTCATTAGCG 
CCTGAAGCAT TGCAACCAGC CATAAGCAAA GTTGCAACAG ATATCAACAT GTTAAATAAC 
TTTAATGACC CAAAAGGACA ATATCTGTTC TGCCTCAATT GCAGTAATCT GTAA 

 

Protein sequence

MKGLFHFISK CFQAIWKLLS FTRQLVLNLF FLAFIGVIAF TFLSTDDIQQ DQTVEKKALI 
LDLSGPIVEE SKFREPLERV TADLLGSQRS QENVLFDIVD TIRYAAKDDN VSGLVLHLKE 
MNETSLTKLR YIAKAINTFK ASGKPVYAIG DYYNQSQYYL ASYADKIFMA PDGAVLLRGY 
GAYTLYYKDL LEKLNVSTHV FRVGTYKSAV EPYLRNDMSD AAKASTSAWL TQLWDAYLGD 
VSTNRQIDAK TLTMPMDQFI AKLTALNGDL SQMTVELGLV DKLATRQEVR KDLITEFGSN 
GYDSFKQISY YDYLPQVHPS IIPDAKDIAV VVASGAIMDG TQRQGTVGGD STAALLRQAR 
DDDNVKAVVL RVDSPGGSAF ASEIIRNEVD ALQEAGKPVV ISMSSVAASG GYWISASADK 
IIAQPTTITG SIGIFGILTT FEKGLEKMGI HSDGISTSPF NGIGLTRPLD KDVAQVMQLG 
IEHGYYRFIK LVSDHRDMSL DAVDNVAQGR VWTGKDALEH GLIDQLGDFD DAVQAAAELA 
NMDAYNLFWV KEPLTPMEQF LEELSMSLNV SVKAELFSLA PEALQPAISK VATDINMLNN 
FNDPKGQYLF CLNCSNL