Gene VSAL_I2140 details

Gene Information

• Locus tag: VSAL_I2140
• Symbol: uvrC
• ID: 6988968
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2294845
• End bp: 2296671
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643380426
• Product: excinuclease ABC subunit C
• Protein accession: YP_002263510
• Protein GI: 209695581
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.604529
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCTCCTT TTGATTCAAA AGCTTTTCTA CTATCAGTTA CCCATCAGCC CGGCGTTTAT 
CGAATGTATA ACGCCGAAGC TGAGGTTATT TACGTCGGTA AAGCAAAGGA TTTAAAAAAG 
CGATTATCGA GCTATTTTCG CAGTAATATC CCTTCAGAAA AAACCAAAGC CTTGGTCACT 
CATATTGCAC AAATTGATGT TACGGTCACT CATACAGAAA CTGAAGCATT AATTCTTGAG 
CATAATTATA TTAAGCAATA TTTACCTAAA TATAATGTGC TGCTGCGTGA TGATAAATCT 
TATCCTTACA TTTTTATTTC GAATCATAAG CATCCAAGGA TCTCCATTCA TCGTGGTACG 
AAACGAAAAA AAGGAGAATA TTTTGGACCT TATCCTGATT CAGGAGCGGT TAGAGATTCC 
CTTCATCTAA TTCAAAAACT ATTCCCTATT CGTCAATGTG AAGATTCAGT GTATGCAAAT 
CGTCATAGAC CTTGTTTAAT GCATCAAATT GGTCGCTGTT TAGCACCATG CGTAAAAGGC 
ATTATTAGTG ATGAAGATTA TGCCGAGCAA ACTGAATTTA TTCGATTGTT TTTGCAAGGG 
AAAGATCGAC AAGTTATTCA ATCTCTAGTT GAACAAATGG AAGGGGCGAG TCAGGCTCTT 
AATTTTGAAA AAGCAGCGAC AATTCGTGAT CAAATTCAAT CAATGAGACG CGTACAAGAA 
CAACAATATG TTTCGGATGA AAGTAGTGAC GATCTTGATG TATTAGGTTT TACAATTGAA 
AATGGACTCG CTTGTATTCA CTTGTTAATG ATTCGGCATG GAAAGATTTT AGGCAGCCGT 
AGCTTTTTTC CTAAAATTCC AGCTAAAACT GAGAAAGAGG AAGTGTTTTC TAGTTTTCTC 
ACTCAATATT ATTTAAACCA TAGTCAAGGG CGCACTATTC CCAATCGAGT GATTACCAGT 
TTTGAATTTG AGAGTGAAGG GCTAGAGCAG GCATTAACGG AGCTGTCTGG CCGTAAAGTG 
TTATTTCAAT TAAACCCTAA AGGAATGAAA GGTCGCTATT TAAAACTCGC GGATACGAAT 
GCATTGTCGG CCTTAACGAG TAAGGCTAAC CATAAGCTTA CGGTTTATCA GCGATTTAAA 
CAGTTAGAAG AAGCGCTTTC TTTAGCATCT ATCCAACGTA TGGAATGTTT TGATATCAGT 
CATACGATGG GAGAGAAAAC CGTTGCGTCA TGCGTTGTAT TTAATCAAGA AGGGCCAGTA 
AAATCGGAAT ATCGTCGATA CAATATTACC GGTATTACTG GAGGGGATGA TTACGCCGCG 
ATGGCTCAAG TTTTAGAGCG TCGTTATAGT AAGCAATTGG ATATTGATAA AATCCCTGAT 
ATTGTGTTTA TTGACGGAGG AAAAGGGCAA TTGAACAGAG CTTACGACGT TATTCGTCAG 
CATTGGGGAG ATTGGCCTAA AAGACCGTTA TTACTTGGGA TTGCAAAAGG AGTGACAAGA 
AAGCATGGGC TAGAGACTCT GGTGAAAATT ACAGGAGAAG AGTTTTCGAT GCCAAGTGAT 
TCGCCTGCAT TGCATTTAAT ACAACATATT CGTGATGAGA GTCATAATCA TGCGATTAGC 
GGGCACCGTG CTCAGCGCGC TAAAGTAAGA AAAACCAGTA CATTGCAACA CATTGAAGGT 
GTCGGTCCTA AGCGGAGACA AGCATTATTA CAATATTTAG GTGGTCTACA AGAATTAAAA 
AAGGCAAGTG TTGAAGAAAT AAGCAAAGTG CCAGGTATTA GCCGCTCTTT AGCAGAAAAA 
ATACAGGATG CGTTGAAACA AGGGTAA 

 

Protein sequence

MPPFDSKAFL LSVTHQPGVY RMYNAEAEVI YVGKAKDLKK RLSSYFRSNI PSEKTKALVT 
HIAQIDVTVT HTETEALILE HNYIKQYLPK YNVLLRDDKS YPYIFISNHK HPRISIHRGT 
KRKKGEYFGP YPDSGAVRDS LHLIQKLFPI RQCEDSVYAN RHRPCLMHQI GRCLAPCVKG 
IISDEDYAEQ TEFIRLFLQG KDRQVIQSLV EQMEGASQAL NFEKAATIRD QIQSMRRVQE 
QQYVSDESSD DLDVLGFTIE NGLACIHLLM IRHGKILGSR SFFPKIPAKT EKEEVFSSFL 
TQYYLNHSQG RTIPNRVITS FEFESEGLEQ ALTELSGRKV LFQLNPKGMK GRYLKLADTN 
ALSALTSKAN HKLTVYQRFK QLEEALSLAS IQRMECFDIS HTMGEKTVAS CVVFNQEGPV 
KSEYRRYNIT GITGGDDYAA MAQVLERRYS KQLDIDKIPD IVFIDGGKGQ LNRAYDVIRQ 
HWGDWPKRPL LLGIAKGVTR KHGLETLVKI TGEEFSMPSD SPALHLIQHI RDESHNHAIS 
GHRAQRAKVR KTSTLQHIEG VGPKRRQALL QYLGGLQELK KASVEEISKV PGISRSLAEK 
IQDALKQG