| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2138 |
|---|
| Symbol | |
|---|
| ID | 6987613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2289942 |
|---|
| End bp | 2292845 |
|---|
| Gene Length | 2904 bp |
|---|
| Protein Length | 967 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643380420 |
|---|
| Product | putative diaminobutyrate--2-oxoglutarate aminotransferase |
|---|
| Protein accession | YP_002263508 |
|---|
| Protein GI | 209695579 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins
[COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00709] 2,4-diaminobutyrate 4-transaminases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00227594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTG TATTTAATGT CGATAACTCG ATACTTACGT CTGCATTTTC ACTTCAGGTT
CCGATTTTAG ATAAGCTCTA TGATCTAACA CCAGATAAAG CTCTAATCGA ACAAACTGAA
CATGAATCAG AGGTTCGCTC TTATCCTAGA CGTTTACCAA TAGCGATAAA AAAAGCGTTT
GGTGTGTTAG TTGAAGACAC GCGCGGACAA CTTTATTTAG ATTGCTTGGC AGGAGCTGGA
ACACTGGCGC TAGGCTACAA CCATCCTGAA ATCAATCAAG CATTAAAAGA TCAATTAGAT
TCAGGTTTGC CTTATCAAAC TTTGGATATT ACAACGGAAG TTAAAAATAC CTTTATTCAA
AAAGTGAAAC GTTTTTTACC GTCTTATTTT TCTGAAAACG CCGTAATTCA GTTCTGTGGT
CCATCAGGTG CTGACGCTGT TGAAGCGGCC ATAAAACTGG CTAAGCAAAC AACGGGACGA
AATACGATGT TTGCATTTCG TGGGGCGTAT CACGGTATGA CAAATGGCAC GATGGGGATG
ATGGGTAATC TTGAAACGAA ATCTAGACGC ACTGGATTGA TGTCTGATGT TCATTTCATG
CCCTTTCCTT ATGATTTACG CTGTCCCTTT GGGCTTGGTG GCGATGATGG TGCGAAAGCC
AGTATCCAAT ATATTGAACG GTTATTAAGT GATGATGAAG CTGGGATTAT GAAACCGGCG
GCGATGATTG TCGAACCCAT TCAAGGTGAA GGTGGTGTGG TTCCTGCCCC AGTTTTTTGG
TTGAAAGAGT TACGACGCTT GTGTGATGAA CATGAGATCT TACTCATATT AGATGAAATT
CAATGTGGTG TTGGTAAATC TGGTTATAAC TTTGCTTTTG AAGAATCCAA TGTTTCTCCT
GATATTTTAT GTTTATCAAA AGCCATTGGC GGCGGTTTAC CAATGTCCCT GTTGGTGTTT
AATAAGAGCA TCGATACATG GAAAGCGGGT GAGCATACAG GAACATTTCG TGGTAATCAG
TTAGCAATGG TATCAGGGAC AAAAGCGTTA GATATTATTG AGCGAGATAA TTTGGTAGAA
CATGCCACTG TGGCGGGTAA ATATTTTCGT TTAGGTTTAG AGGCGTTACA ACAACGCGTT
AATTGCATTG CAGAGGTCCG TGGTAAAGGG TTGATGCTAG GTATTGAGAT TCAAAAACCA
GACGGCAGTA AAAATAAATT TAATGAACCT CAATCTGATG GTGCTCTTAC TTTAGCGATT
CAAAGGGCAT CATTGGAGCG TGGTTTGCTG ATTGAAAAAG GGGGACGTGA TGGTTCTGTT
ATTCGTTTTC TTCCCCCTCT TATTATCAGT TTTGAACAAA TTGATTTTGC TCTACGTGTA
CTTGAAGATG CGATGATTGC TTGTGGTGGT GTGAGTGACA CGATTGAGAG TGATGAAGTG
CGTGAAGAAT GGAGGTCTCA CTTTCTTCAT ACTGGGAAAT GTGGAAGTGA CACTTTTTCT
CAAGTGATGA ATCACACAAC AAAAGCAATG AAAGCTGTTT TTGAGCAAAC GACAGCCCCG
TATTCAGGTT TAGATCCAAA AGAACTAGAG AAAGCCATTT ATGCGGTGAA TTTAGATACA
AATAACGCAC CCATTAATGA TGTTATTGAT GATATGGCGG ATCTTGTTGC TAAGCACTCA
ATTATTGTTC AACACCCAAG CTGTATTGCC CATCTGCATA CACCGCCATT GATGTCCGCG
ATTGCCGCTG AAGTAATGAT TGCAACGCTA AATCAATCAA TGGATTCATG GGATCAAGCT
TCTTCAGCGA CGTATGTTGA ACAGAAAGTC ATTGATTGGG TTTGTACTAA ATATCAATTA
GGTGCTGACT CAGATGGCGT TTTCACCAGT GGTGGAACAC AAAGTAATCT CATGGGGCTA
CTGTTAGCTC GGGACTGGAT TGCGGATATG ATCAGCCAGC ACTCAATCCA AAAACAAGGC
CTTCCAGAAT ATGCACATAA GCTGCGTATT ATATGCTCTA ACAAATCACA CTTTACGGTA
CAGAAATCAG CGTCTCTATT AGGGCTTGGT GAAAAAGCGG TGTGCAGTGT TGAGACAAAT
GATAATGGCA CCATAAAAAT TGCAGATCTT AATAAGACAA TCTTCGATTT AAAAGCCAAT
GGATTGATCC CATTTGTACT TGTTGGCACC GCTGGGACGA CCGACCATGG TGCTATCGAT
GATTTATCTG CATTAGCGGA TACCGCCCAA GAACATGATC TTTGGTTTCA TGTAGATGGT
GCTTATGGAG GGGCATTAAT ACTCAGTAGC CATAAAAAGC GTTTAAATGG AATCGATCGT
GCTGATTCTT TAAGTGTTGA TTTTCATAAA CTATTTTATC AAACCATTAG CTGTGGGGCT
TTGCTGTTAA AGAATCAATC GGCTTTTAAA TATTTACTTC ATCATGCGGA TTATTTAAAT
AGAGAGCATG ATGAACTTCC TAATTTAGTC GATAAATCCA TAGCAACGAC TCGTCGATTT
GATGCATTAA AAATATTCAT GACGATGCAG AATGTGGGGC CTAACGTATT AGGTGATATG
TATGACCATT TGCTGGATCA AACACAAAGA GTAGCAAGCT TAATCAAACA AAATGAATGC
TTTGAATTAC TTGCTCAACC TGCATTATCA ACCGTCCTAT TTCGTGTCGT TAATCATGAC
ATTGAACGTC TTAATTGTCT TAATCAGAAC GTAAGGATTG AAGCGTTAAC TCGAGGTGTT
GCCATTCTCG GGGAAACGAT TGTGGGTGAT AAAACCGCAT TGAAATTAAC CATACTTAAT
CCATGTTTAA AGATGTCTGA TTTTGAATCT TTGCTGGAAA AAATTAATAC GTTGGCCGTA
GAACTATCAA ATAAGGGTAA ATAA
|
|---|
| Protein sequence | MSSVFNVDNS ILTSAFSLQV PILDKLYDLT PDKALIEQTE HESEVRSYPR RLPIAIKKAF
GVLVEDTRGQ LYLDCLAGAG TLALGYNHPE INQALKDQLD SGLPYQTLDI TTEVKNTFIQ
KVKRFLPSYF SENAVIQFCG PSGADAVEAA IKLAKQTTGR NTMFAFRGAY HGMTNGTMGM
MGNLETKSRR TGLMSDVHFM PFPYDLRCPF GLGGDDGAKA SIQYIERLLS DDEAGIMKPA
AMIVEPIQGE GGVVPAPVFW LKELRRLCDE HEILLILDEI QCGVGKSGYN FAFEESNVSP
DILCLSKAIG GGLPMSLLVF NKSIDTWKAG EHTGTFRGNQ LAMVSGTKAL DIIERDNLVE
HATVAGKYFR LGLEALQQRV NCIAEVRGKG LMLGIEIQKP DGSKNKFNEP QSDGALTLAI
QRASLERGLL IEKGGRDGSV IRFLPPLIIS FEQIDFALRV LEDAMIACGG VSDTIESDEV
REEWRSHFLH TGKCGSDTFS QVMNHTTKAM KAVFEQTTAP YSGLDPKELE KAIYAVNLDT
NNAPINDVID DMADLVAKHS IIVQHPSCIA HLHTPPLMSA IAAEVMIATL NQSMDSWDQA
SSATYVEQKV IDWVCTKYQL GADSDGVFTS GGTQSNLMGL LLARDWIADM ISQHSIQKQG
LPEYAHKLRI ICSNKSHFTV QKSASLLGLG EKAVCSVETN DNGTIKIADL NKTIFDLKAN
GLIPFVLVGT AGTTDHGAID DLSALADTAQ EHDLWFHVDG AYGGALILSS HKKRLNGIDR
ADSLSVDFHK LFYQTISCGA LLLKNQSAFK YLLHHADYLN REHDELPNLV DKSIATTRRF
DALKIFMTMQ NVGPNVLGDM YDHLLDQTQR VASLIKQNEC FELLAQPALS TVLFRVVNHD
IERLNCLNQN VRIEALTRGV AILGETIVGD KTALKLTILN PCLKMSDFES LLEKINTLAV
ELSNKGK
|
|---|
| |