Gene VSAL_I2082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I2082 
Symbol 
ID6987570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp2233560 
End bp2235284 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content42% 
IMG OID643380369 
Productputative helicase (DEAD/DEAH box helicase) 
Protein accessionYP_002263457 
Protein GI209695528 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1061] DNA or RNA helicases of superfamily II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATACGT TACGTCCTTA TCAACAAGAT TCAGTCAAAG CCGTTATTCA TTATTTCCGA 
AAACACACCA GCCCTGCGGT ATTAGTGTTG CCGACGGGTG CCGGTAAAAG TTTGGTGATT
GCTGAGTTGG CACGCATTGC TAAAGGTCGT GTATTGGTCA TGGCTCACGT AAAAGAATTG
GTTGAGCAAA ACCATGAAAA ATACGAAGGG TACGGCGAAG AAGCCTCTAT ATTTTCAGCA
GGATTAGGGC GTAAAGAAAC CGATAAAAAA GTGGTTTTTG CCTCGGTACA ATCAGTGGTT
CGTAATCTTA ACTCGTTCAA AGATCAGTTT TCTCTGCTCG TCATTGATGA ATGCCACCGA
GTGCCTGACA ACAAAGACAC CAGTTACCGT AAAGTTATCG AACATCTGCA AACCCAAAAT
TCTGGCATTA AAGTGCTTGG CTTAACTGCC ACCCCTTATC GTTTAGGCAT TGGTTGGATT
TATCAATATC ACACTCGTGG ACAAGTCAAA ACCGACACGC CTCGTTTTTT CCGTGATTGT
ATTTTTGAGT TACCAATTCA ATATCTATTG GATGAGGGCT TTTTAACCCC TGCAAAATTA
TTGGATGCCC CAATTTTAAG CTACGACTTT TCTCAGTTAA AACCCGCCTC AACGGGTCGT
TATAAAGAAT CAGAATTGGA TCTGGTGATT GAAGAATCGA AACGCGCAAC ACCTCAAATT
GTTCAACAAA TCATTGAATA TGCCAAAGAC AGAAAAGGCG TGATGATTTT TGCGGCAACA
GTTCGTCATG CTCAAGAAAT ATTATCATTA CTGCCACCAG AGCAATCCGA ATTGGTGATT
GGCGATACCA AAGTGATTGA ACGTGATGCC ATTATCCAAC GCTTCAAACA ACAACAAACC
AAGTTTTTGG TTAATGTGTC GGTATTAACA ACCGGATTTG ATGCGCCTCA TGTCGATCTC
ATTGCTATTT TACGTCCAAC CGAATCCGTC AGTTTGTACC AACAAATTGT CGGGCGAGGG
TTACGTTTAG CTGAAGGGAA AACAGAATGT ACTATTTTGG ATTACGCGGG GAATTGCTAT
GATCTCTACC AACCAGAGGT CGGTGATCCT AAACCTGACA GTAACAGCGA AATAATCACG
ATTCCCTGCC CTGCTTGCGG TTTTAACAAT AATTTCTGGG GTAAATTAGA CAGTAATGGG
TTTTTACTGG AACATTTTGG TCGTCGTTGC CAAGGCTATT TTGAAGACGA TGAAGGCACA
CGTGAAGAGT GTGGCTATCG CTTTAGAGCT AAATACTGTA ACGAGTGCGG TGCCGATAAC
GACATTGCTG CACGTATCTG CCATGAATGT GATGCTATTT TAGTCGATCC AGATAAAAAA
CTAAAAGAAG CCCTTAAACT AAAAGAAGCC CGTATTCTCA ACTGCATTGA TTTAACACTG
ACCGCAGGAA AGAATCAGTT TGATAAGCCA CAAATTAAAG TCACGTATTC TGGTGATGAT
GACTCTGAAT TGCATGAAGT GTGGCAACTG GGTACTAAGA AACAGAAGCA ATTATTTTTA
AACAATTTTG TCCGCCCTCA TTTAGTCGAC AGGCATCGCC CATTTGAAGA AACAACAGCA
ATAAAAATAG CGAATAGCCA ACACCGATTC CGTCCACCAA GCTTTGTTAT CGCTCGTAAG
CAAGGCAAGT TTTGGTCTAT TCGCGATAAG ATTTTTGAAG AGTAA
 
Protein sequence
MYTLRPYQQD SVKAVIHYFR KHTSPAVLVL PTGAGKSLVI AELARIAKGR VLVMAHVKEL 
VEQNHEKYEG YGEEASIFSA GLGRKETDKK VVFASVQSVV RNLNSFKDQF SLLVIDECHR
VPDNKDTSYR KVIEHLQTQN SGIKVLGLTA TPYRLGIGWI YQYHTRGQVK TDTPRFFRDC
IFELPIQYLL DEGFLTPAKL LDAPILSYDF SQLKPASTGR YKESELDLVI EESKRATPQI
VQQIIEYAKD RKGVMIFAAT VRHAQEILSL LPPEQSELVI GDTKVIERDA IIQRFKQQQT
KFLVNVSVLT TGFDAPHVDL IAILRPTESV SLYQQIVGRG LRLAEGKTEC TILDYAGNCY
DLYQPEVGDP KPDSNSEIIT IPCPACGFNN NFWGKLDSNG FLLEHFGRRC QGYFEDDEGT
REECGYRFRA KYCNECGADN DIAARICHEC DAILVDPDKK LKEALKLKEA RILNCIDLTL
TAGKNQFDKP QIKVTYSGDD DSELHEVWQL GTKKQKQLFL NNFVRPHLVD RHRPFEETTA
IKIANSQHRF RPPSFVIARK QGKFWSIRDK IFEE