| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2056 |
|---|
| Symbol | aapQ |
|---|
| ID | 6988205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2202886 |
|---|
| End bp | 2204007 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643380343 |
|---|
| Product | general L-amino acid ABC transporter permease protein |
|---|
| Protein accession | YP_002263432 |
|---|
| Protein GI | 209695503 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.191054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCTA AAAATAAAAA TATTTTATAC AACCCAACAT TTCGTGCGAT TTTATTTCAG
GTGCTTGCAA TTACTGCACT TGGCTTTTTC TTTTACACCA TAGTCAACAA TGCATTGTCC
AATTTAGAAT CTCGAGGTAT CGGTCTTTCT TTAGTGGAAT ACGATGAAAC ATATTCTTAT
GGTCGCACCT TTATTGTTGG ATTGCTGAAC ACCGCCCTAG TCTCCGTCCT AGGCGTTTTA
TTGGCCACTA TTTTAGGCTT TACTGTCGGA ATAGCTCGTC TATCAAGTAA CTGGCTAGTT
AGCCGCTGTG CTGCTGTCTA TATCGAAACG TTCCGAAATA TCCCTCTTTT GCTACAAATC
TTTTTTTGGT ATTTTGCCGT TTTACCTGCC CTCCCTTCAC CTCGACAAAG TTTAAGCTTA
GGTGAAAGTA TTTTCCTCAA TGTTCGAGGC TTATTTTTTC CGAGCCCCAT TTTTGAAGAA
GGTTCTAATC TAATAGGAAT GGCCGTCGTC CTTGCTATTG TGTTTATTAT TTTCTTATCA
CGTTGGGCAC ATAACAAACA AACCCTAACC GGACAACAAA CTCCCGTTGT GCGCTACTCC
ATTTTGTTGT TAATCGCGTT ACCTACTCTC GCTTATTTCA TTTCTGGTAT GCCCGTTTCG
ATTGAATACC CAGAGCTCAA AGGATTTAAC TTTCGTGGTG GCATCAGTAT CATTCCTGAA
TTAGCGGCAC TGGTGGTGGC ACTGAGTGTT TATACCGCCT CATTTATCGC AGAGATTGTT
CGTTCAGGCA TTAATGCGGT AAGTTACGGC CAAACAGAGG CTGCGATGGC ACTTGGTTTA
CCAAGAAATA AAACACTAAA ACTTGTCGTT ATTCCACAAG CAATGCGGAT CATCATTCCC
CCTCTAACCA GTCAATATTT AAACTTAACC AAAAACTCGT CATTAGCGAT GGCTATCGGT
TATCCAGATT TAGTTTCTGT ATTTGCAGGA ACGACACTGA ACCAAACAGG ACAAGCTATC
GAAATCATAA CAATGACAAT GGGCGTGTAC CTTACATTAA GCCTGCTAAC CTCATTCGTT
ATGAACATTT ATAACAACAA AGTCGCATTG GTTGAGAGGT AA
|
|---|
| Protein sequence | MSSKNKNILY NPTFRAILFQ VLAITALGFF FYTIVNNALS NLESRGIGLS LVEYDETYSY
GRTFIVGLLN TALVSVLGVL LATILGFTVG IARLSSNWLV SRCAAVYIET FRNIPLLLQI
FFWYFAVLPA LPSPRQSLSL GESIFLNVRG LFFPSPIFEE GSNLIGMAVV LAIVFIIFLS
RWAHNKQTLT GQQTPVVRYS ILLLIALPTL AYFISGMPVS IEYPELKGFN FRGGISIIPE
LAALVVALSV YTASFIAEIV RSGINAVSYG QTEAAMALGL PRNKTLKLVV IPQAMRIIIP
PLTSQYLNLT KNSSLAMAIG YPDLVSVFAG TTLNQTGQAI EIITMTMGVY LTLSLLTSFV
MNIYNNKVAL VER
|
|---|
| |