Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1989 |
Symbol | |
ID | 6987495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 2131373 |
End bp | 2133082 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 643380288 |
Product | ABC transporter ATP-binding protein |
Protein accession | YP_002263377 |
Protein GI | 209695448 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR01166] cobalt transport protein ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0915836 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGTAA CCTTTTCTAA TTTCTCTTTT CGATATGCGT CACAGGATAA ACCGACGCTT AAAAATATCA ATCTAAGGAT AGAACAAGGC GAAAAGATTG TGATTATCGG GCCAAGTGGC AGCGGTAAAT CAACATTAGG TCAATGTTTA AATGGCTTAA TCCCTCACAC AATTAAAGGT GAGGTAGAAG GACAACTGTT CATTAATGAA TGCGATGTTG CTGATTGGAA AATCGAACAA TACACTGAGA ATGTGGGTAC TGTTTTACAA GATACAGACA GTCAATTTGT TGGATTAACG GTTGGGGAAG ATATTGCCTT TGCACTTGAG AATCAAATGA TCTCAAAAGC TGAAATGTAC CCAGTTGTTC GCGATGTTGC CAAAATGGTA GATTTGACCG CACTACTTAA AAAGTCACCT TATGATTTGA GTGGTGGTCA AAAGCAACGT GTGTCATTGG GTGGTATTCT GGTCGATAAT GTCGATATTC TATTATTTGA TGAACCTTTG GCAAGCCTAG ATCCTAAAAC AGGTAAGGCA ACGATTGAGA TCATTGATGA GCTTCATAAA AATCGTGGCA AAACGGTTAT TATTATTGAG CACCGCTTAG AGGATGTTTT ACATCGTTCT ATCGATCGAG TGATCTTAAT GGATCAAGGC GAGATTGTTG CAGATACAAC CCCTGATAAA CTGCTGCAAA CATCACTGCT TGTTGAGCAT GGTATCCGTG AACCACTTTA TATCTCTGCA TTAAAATCCA GTGGGTTTGA TATATCTCAA GAGCCGCACA TCAGTCAGCT TTCATCATTA GATAGTCAAA AAATAGCGTT AAGTATGAAC CAATGGTTTG TAAATACCGA CAGTGATGCT CTTGTTGAAA GTAAAACAGA AGCATTACTT TGTATTGATA ACTTAACTTA TTCTTATGAT GGCGACGTTA ACGCATTAGA TAATATTTCT TTTAATGTAA ACAAAGGCGA ATTTGTTTCA ATTTTAGGTA AAAATGGTTC AGGTAAGTCA ACCATTACAA AATTGATCAT GGGTGTTTTA CAACCGGATC TGGGTTCGAT CAGTTTGAAT GGACAAGATT TAAGTCAATT ATCCATTTCT GAACGCTCCC AAAAAGTGGG CGTTGTTTTA CAAAACCCAA ATCATATGAT CTCGCATCAC ATGATTTTTG ATGAAATCGC ATTTGGCTTA GTTAATAGCG GCCTCTCTGA GGCAGAGATT GAGAGTAAAG TAACAAAAGC ATTAGATTTG TGTGGATTAC GTCGTTTCCG TCATTGGCCT ATTGATGCAT TGAGTTACGG GCAGAAAAAA CGAGTGACCA TCGCGTCAAT TCTTGTTCTT GAACCTGAAT TATTGATCCT TGATGAACCA ACGGCAGGTC AAGATTATCG AAATTATACA TCAATGCTTC ACTTCATTAA CGAGCTGAAC CAAACGTTGG GTTTAACAGT GATTATCATT TCTCATGATA TGCATTTAGT GCTTGAGCAT ACCACTCGTG CCATTGTGAT TGCAGATAGC CATTGTGTTG CGGATGACCG CGTTATTTCT ATATTTAGCC AACCAGAATT ATTAGATAAA GCCAATTTGA CGGTGACCAG TTTGTATGAG CTGGTTAATA AAGCAGGCAT AAAGAATATA ACGGGCTTTA TGAATCAGTT TATTAGCACT GAGCGTGAGA GCGATAAGAA TGTCCACTAA
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Protein sequence | MSVTFSNFSF RYASQDKPTL KNINLRIEQG EKIVIIGPSG SGKSTLGQCL NGLIPHTIKG EVEGQLFINE CDVADWKIEQ YTENVGTVLQ DTDSQFVGLT VGEDIAFALE NQMISKAEMY PVVRDVAKMV DLTALLKKSP YDLSGGQKQR VSLGGILVDN VDILLFDEPL ASLDPKTGKA TIEIIDELHK NRGKTVIIIE HRLEDVLHRS IDRVILMDQG EIVADTTPDK LLQTSLLVEH GIREPLYISA LKSSGFDISQ EPHISQLSSL DSQKIALSMN QWFVNTDSDA LVESKTEALL CIDNLTYSYD GDVNALDNIS FNVNKGEFVS ILGKNGSGKS TITKLIMGVL QPDLGSISLN GQDLSQLSIS ERSQKVGVVL QNPNHMISHH MIFDEIAFGL VNSGLSEAEI ESKVTKALDL CGLRRFRHWP IDALSYGQKK RVTIASILVL EPELLILDEP TAGQDYRNYT SMLHFINELN QTLGLTVIII SHDMHLVLEH TTRAIVIADS HCVADDRVIS IFSQPELLDK ANLTVTSLYE LVNKAGIKNI TGFMNQFIST ERESDKNVH
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