| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1977 |
|---|
| Symbol | |
|---|
| ID | 6987488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2118542 |
|---|
| End bp | 2120293 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643380274 |
|---|
| Product | membrane associated GGDEF protein |
|---|
| Protein accession | YP_002263365 |
|---|
| Protein GI | 209695436 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCATTTAC ATCAAACAGA ACAACAGACG ATTAATTTTT GGCAGTCCAA TGAAAAAAAT
ACCATCAGTA AAAAATGGCT ATACTTCCCG ATAATTAGCA TGGTTATTTC TATGTTTATT
GGGCTTTTCG TTTTTAATTC AACACTTTCG GATTGGCTAG AAAAGAAAGT TGAAGGGGGA
TTATCAAATG AAATCACAAG AACCATCAAA GACATTAATG AAGACCAAAT CTCTTTTGAT
GATCCTGTTC AGCTCGATAT CTATTTCAAA ACACAAGTTG AAGTAGCAAA AGAAGACCAC
ATTACTCTAA TAAAAGAAGA CGGTACTCCA ATTGCGGATA GCGATATTTC TTTAGCCTCT
GTGTTAGCAC TTGAAAACCA TTTAAATCGA CAAGAAATTA TTGATGCCAA AGATGGTTCG
TACGGCACAA CGACTCGTTT TAGTACCTCT CGCTTTAAAA ATTTACTCTA TTCAGCAAAA
TCATTTGAAT ACCAAGGACA AACTTACATT CTTCGAGCGG CAACACCATT AACTCGAATA
GATGCCATGG TTGAAGAGTT AATGAATATT CTCATTGTTT TGATGGGAAT TAACATTGTA
TTGGTTATTG GCTCTTCTTT GTTAAGTAAC AAACTGATTC ATCAACAAGT TAAGAATGAG
CAAGACCAAC AAGAAGAACG CATCGAACAA AGCACGCAAG AAATTGAATT GCTTCATCGC
CTTGCCAACA TGCTTGCTGC TTGTAATTCA ATTACTGAAG CTCAAATGGT GGTTGAAGAT
ATTCTTCCTC GTATTTTAGG CGACGTAAAT GGCGTTGTTT CTCTCATCCG CTCATCACGC
AATCAATTAT TAGTTAAATT GGATTGGGGT GGCTCATGGT CAGGAAGTAA AACCTATGCT
CCTGAAGAGT GCTGGGCATT ACGAAAAGGC AAATTCCACC TAGCTAATGA TAAATACACC
ACACTTCCTT GTTCACATAT GGCCGCCACC GGTACTGATC AAACCCTATG TATCCCATTG
ATTGCTCATG GTAATACAAT AGGAATGATG CATATTTATC TTGGTCCAAA TAAAGACATT
GAAGAAAAAA CTCAAAAACT GGCATTTACA GTCGCAGAAC ATTTGGGTCT TGCACTTGCT
AATCTCAACT TACAAGAAAA GCTTCGTGAA CAAGCAATCA GTGACCCATT AACAGGGCTA
TATAATCGCC GTTATTATGA AGAAACCATT AATCAAGAAT TGATGCGATC TAATCGACAC
AAACAAGAAA TGTCGTTATT AATGCTCGAT TTAGACCATT TTAAACGATT TAATGATAAT
TACGGGCATG ACGCTGGTGA TTACGTGCTG AAAACCATTG GTTCCTTACT GCTTAGTACC
ATGCGTGGAG AAGATACAAT TTGTCGTCTT GGTGGCGAAG AACTCGCGAT TATCTTACCC
AATACCAGTG CTGAAGCGGC AACCAAGGTG GCTAACAGCC TATGTCAATC GGTCAGTGAT
TTACATCTAG CCATCAAAGA TTTATCTCTT GGCAAGTTAA GCGTCTCTAT TGGTATCTCA
ACTTACCCTG CGAATGGCCT GCAAGCCGAT GACTTAACTA AATTGGCTGA TATTGCTCTT
TATGAAGCAA AAGGAAGAGG GCGAGATCAA TCTTGCCATT ATGATGATTT AACCCAAAAC
GCAGAAAGCA TCATTGAAAA TACAGATAAA AATACGTGTA ACAATGAAAA TGTGACCGCG
ATAAAACAGT AA
|
|---|
| Protein sequence | MHLHQTEQQT INFWQSNEKN TISKKWLYFP IISMVISMFI GLFVFNSTLS DWLEKKVEGG
LSNEITRTIK DINEDQISFD DPVQLDIYFK TQVEVAKEDH ITLIKEDGTP IADSDISLAS
VLALENHLNR QEIIDAKDGS YGTTTRFSTS RFKNLLYSAK SFEYQGQTYI LRAATPLTRI
DAMVEELMNI LIVLMGINIV LVIGSSLLSN KLIHQQVKNE QDQQEERIEQ STQEIELLHR
LANMLAACNS ITEAQMVVED ILPRILGDVN GVVSLIRSSR NQLLVKLDWG GSWSGSKTYA
PEECWALRKG KFHLANDKYT TLPCSHMAAT GTDQTLCIPL IAHGNTIGMM HIYLGPNKDI
EEKTQKLAFT VAEHLGLALA NLNLQEKLRE QAISDPLTGL YNRRYYEETI NQELMRSNRH
KQEMSLLMLD LDHFKRFNDN YGHDAGDYVL KTIGSLLLST MRGEDTICRL GGEELAIILP
NTSAEAATKV ANSLCQSVSD LHLAIKDLSL GKLSVSIGIS TYPANGLQAD DLTKLADIAL
YEAKGRGRDQ SCHYDDLTQN AESIIENTDK NTCNNENVTA IKQ
|
|---|
| |