Gene VSAL_I1949 details

Gene Information

• Locus tag: VSAL_I1949
• Symbol: oppD
• ID: 6988935
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2086048
• End bp: 2087013
• Gene Length: 966 bp
• Protein Length: 321 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643380244
• Product: oligopeptide transporter ATP-binding component
• Protein accession: YP_002263338
• Protein GI: 209695409
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTAT TAGATGTAAA AGATCTGCGT GTCGAGTTTA CAACTCAAGA TGGCAATGTC 
ACCGCAGTAA ATGATTTAAA TTTTTCACTA GAGCAAGGTG AGACATTAGG CATTGTTGGC 
GAATCTGGTT CGGGTAAATC TCAAACTGTT TTCGCATTAA TGGGTCTATT AGCAAAAAAC 
GGTATTATTA CGGGCAGTGC TAAATTTGAA GGTAAAGAAG TTTTAAATTT ACCAGAACAT 
GAATTGAATA AAATTCGTGC AGAACAAATG GCAATGATTT TCCAAGACCC GATGACATCA 
TTAAATCCTT ACATGAAAGT CAGTGCTCAG TTAATGGAAG TATTAATGCT TCACAAAGGC 
ATGGGAAAAG CAGAGGCATT TGAAGAATCA GTTCGAATGT TAGAAGCGGT TAAAATCCCT 
GAAGCTCGTA AGCGTATAAC GATGTACCCA CATGAGTTCT CCGGCGGTAT GCGCCAACGA 
GTAATGATTG CAATGGCCTT ATTATGCAGA CCAAAATTAT TGATTGCAGA TGAACCAACA 
ACGGCTTTGG ATGTAACTAT TCAAGCTCAA ATCATGCAGT TGTTGAATGA GTTGAAAAGC 
GAATTTAATA CGGCAATTAT CATGATTACT CATGACTTAG GTGTTGTTGC TGGTTCTTGT 
GACAAAGTAT TAGTGATGTA TGCTGGACGC ACGATGGAGT ACGGTACCGT TAATGAAATA 
TTTTACGAAC CAAGTCATCC ATATGCGGAA GGTTTGCTAA AAGCGATCCC TCGTTTAGAT 
CAAGTTGGCG ATATACTACC AACGATTCCT GGTAATCCAC CGAACTTACT GCGTTTACCT 
ACTGGCTGCC CTTATCAAGA GCGCTGCCAT CGTGTTATGG ACCGTTGTAA GCAAGAAGCG 
CCGATTCTTC TGCCATTTGG TGATGGTCGC TTACGTGCTT GTTTTTCTGA TCAGGGGGCG 
TGGTAA 

 

Protein sequence

MSLLDVKDLR VEFTTQDGNV TAVNDLNFSL EQGETLGIVG ESGSGKSQTV FALMGLLAKN 
GIITGSAKFE GKEVLNLPEH ELNKIRAEQM AMIFQDPMTS LNPYMKVSAQ LMEVLMLHKG 
MGKAEAFEES VRMLEAVKIP EARKRITMYP HEFSGGMRQR VMIAMALLCR PKLLIADEPT 
TALDVTIQAQ IMQLLNELKS EFNTAIIMIT HDLGVVAGSC DKVLVMYAGR TMEYGTVNEI 
FYEPSHPYAE GLLKAIPRLD QVGDILPTIP GNPPNLLRLP TGCPYQERCH RVMDRCKQEA 
PILLPFGDGR LRACFSDQGA W