| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1939 |
|---|
| Symbol | ppiB |
|---|
| ID | 6988761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2074118 |
|---|
| End bp | 2074615 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643380237 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase B |
|---|
| Protein accession | YP_002263331 |
|---|
| Protein GI | 209695402 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCC TTCACACTTC TTTTGGTGAC ATTACAGTTA AACTTCATGA AGACAAAGCA
CCAGTAACTT GTGCTAACTT CCTACAATAC TGTCAAGATG GTTTCTACGA CAACACACTT
TTCCACCGTG TAATTGATGG CTTTATGGTT CAAGGCGGCG GCATGACTGC GGGTCTTGAA
GAAAAAACAA GCCGTGCAAC AATCAAAAAT GAAGCAAACA ATGGCCTAAA CAATAAAGTA
GGTACATTAG CGATGGCTCG TACTATGGAA CCGCATTCTG CAAGTTCTCA GTTCTTCATC
AACGTTAATG ACAACAAATT CTTAGACTTT AAATCAGAGT CTGTAGATGG TTGGGGTTAC
TGTGTATTTG CTGAAGTTGT TGACGGCATG GACGTAGTAA ACAAAATCAA AGGTGTTGCA
ACTGGTAACT ACGGTTACGT ACACCAAGAT GTACCTGTTG AAGAAGTATT CATCACTGGT
ACAACAATTA CAGAATAA
|
|---|
| Protein sequence | MIILHTSFGD ITVKLHEDKA PVTCANFLQY CQDGFYDNTL FHRVIDGFMV QGGGMTAGLE
EKTSRATIKN EANNGLNNKV GTLAMARTME PHSASSQFFI NVNDNKFLDF KSESVDGWGY
CVFAEVVDGM DVVNKIKGVA TGNYGYVHQD VPVEEVFITG TTITE
|
|---|
| |