| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1904 |
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| Symbol | |
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| ID | 6987441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2037316 |
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| End bp | 2038437 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643380205 |
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| Product | secretion protein, HlyD family |
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| Protein accession | YP_002263300 |
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| Protein GI | 209695371 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.382262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGAAA AAATAGAAGA CACCAAGGCA GAAAACAAAT CAGTTAATCA AACGGTTAAA
AAGACAAATA AAGTTCGGAA AATAACAAAT TACCTACTAA TCACGGTCAT TACTTTATTA
TTATTTAGCA TTATTTCTGA TCGAGTCATT CCACTTACAG ATAACGCACG AGTGAAGGGG
TATGTGGTTC CAATTAAGCC ACAGGTATCA GGGCAAGTTT TTGATATTTT AGTTCAGCCT
AATCAGCTTG TAGCACAAGG AGAGGTACTC GCTAAGCTAA ATCCTGTCGA TTATGAAATT
GCAGTAAAAC AAGCAGAACA AAATTTGGAA ATTGCAGGTC AAAATGTTGG AGCGCAAACG
GCAATGATTG CTTCTTCACA AGCAAGGTTA ACGAGTGCGA ATGTTGAATT AGAAAATGTG
AGATTACAAT CTGGTCGAAT CCTTGAAATG GCAGAGCGTG GTGTGGTATC TCAATCTGAT
GCTGACCAAT CTCGAGCATC ACTGGCAACG GCAAGGGCAA ATGTTGTTAA TGCACAAGCT
GATCTTGAGA AATCAAAACG CCAATTAGGA GCCGATGGAG AAGATAACAG TCAGATTAAA
GCGGCGTTAT TAGCATTAGA GCAAGCCCAA ATTAATTTAG AGCGGACAGA AATCAAAGCA
CCTACCGCTG GTGGTGTTTC TAATTTTAGT TTATCTGAAG GTTTTTATGC GTCTGTGGGG
CAGCCTATCA TGACATTTGT CTCGACAGAA AGCATATGGA TTGAAGCTTA TTTTCGAGAG
AATAGCTTAG GTAACATTAA GGTTGGAGAT GCTGTTGAGG TTGCGCTTGA TTTTGCTCCA
GGAAAAGTAA TTAAAGGCAC AGTAACGAGT GTCGATTGGG GGGTTGATTG GGGGCAGAAT
GATCAAGCGG GTAAATTAGC GCAAGCGAAT AATCAAACGG GTTGGTTACG TCAAACACAA
ATGCTACCGA TAGCGATTGA GTTTGATCAC TCACAAGCAA CTGGATTACT ACGAATTGGT
GGCCAAGCGG ATGTGATCGT CTACAGTGGT GATAATGTTA TTTTTAATAC TATTGGTAAA
TTGTGGATCC GCTTTGTGAG CTTGATGTCT TATGTCAGAT AG
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| Protein sequence | MTEKIEDTKA ENKSVNQTVK KTNKVRKITN YLLITVITLL LFSIISDRVI PLTDNARVKG
YVVPIKPQVS GQVFDILVQP NQLVAQGEVL AKLNPVDYEI AVKQAEQNLE IAGQNVGAQT
AMIASSQARL TSANVELENV RLQSGRILEM AERGVVSQSD ADQSRASLAT ARANVVNAQA
DLEKSKRQLG ADGEDNSQIK AALLALEQAQ INLERTEIKA PTAGGVSNFS LSEGFYASVG
QPIMTFVSTE SIWIEAYFRE NSLGNIKVGD AVEVALDFAP GKVIKGTVTS VDWGVDWGQN
DQAGKLAQAN NQTGWLRQTQ MLPIAIEFDH SQATGLLRIG GQADVIVYSG DNVIFNTIGK
LWIRFVSLMS YVR
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