| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1898 |
|---|
| Symbol | tolB |
|---|
| ID | 6989303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2031480 |
|---|
| End bp | 2032832 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643380199 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_002263294 |
|---|
| Protein GI | 209695365 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTTAAAC GATGGATATT ACCTCTTTTT ATAGCGTGTT TGAGTTTTAG CCAAATAGCT
AAAGCTGAAC TAGAGCTTGT AATCACAGAG GGCGTAAATT CTGCTAGACC CATAGGCATC
GTTCCATTTA AGTGGCATGG TGAAGGCAAG TTACCACAAG ATATTTCAGC TATTATTTCT
TCTGACTTAC AGCGCAGTGG TAAATTTAGT CCATTACCGA CAAATAAAAT GCCACAAACG
CCATATAAAG ATGCTGACAT TAATTACGAA GCTTGGACCA AGATGGGCGT TGATGCCATT
GTTACGGGTG AAGTGAAAGT TAATGCCGCT GGAAAGTATG AGGTTTCTTA TAAGCTTATT
GATGTGGTTC GTGGTCAATT AACGAAAGGT AAATCTAAAG GGTTAAGTAA TTCAGGGGAA
TTAGTTTTAA CACAAGACCA TATTTTAGTT AATAAAATTG CGACACTTTC AAAAACACAG
TTACGAAAAT ACGCTCACCG TATTTCTGAT GTTGTTTATG AAAAATTAAC AGGCGAAAAA
GGCGCGTTTT TAACGCGAAT TGCTTATGTG GTTGTTAATG ATAAATCTCA ACATCCATAT
CAGTTAAGAA TTGCGGATTA TGACGGCTAC AACGAACGTT TGGTTTTAAA GTCGAAACAG
CCAATCATGT CACCGGCTTG GTCTCCAGAT GGTAAGAAAT TGGCTTATGT AAGTTTTGAA
AACAGAAGAT CACAAGTTTT CATTATGAAT ATCTACACGG GGAAGAGGGA GTTAATTGCT
TCGTATCCTC GTCATAACGG TGCGCCTCGT TTTTCTCATG ACGGAAAAGA ACTTGCGATC
GTATTATCCA AAACCGGCAG TCTTCAAGTT TATATTGTGA ATTTACAAAC GAAAAAGATG
CGCCAAATTA CTCGAGGTAG ATCGAATAAT ACTGAGCCTT TTTGGGCTCC TGATAACAAG
TCTTTAATAT TTACATCAGA TCGGGGTGGT AAACCTCAGA TTTATAGAGT AAATTTAGAA
GACGGTTCGA CAAAACGTTT AACCTGGCAA GGCAGTCAAA ATCTTGGTGG GCAGATCACT
CCTGATGGTA AATACATCGT TATGGTGAAT CGCTCAGAGA CTGGATTTAA TCTAGCAAAA
CAAGATTTAG AAACCGGTGC TGTCCAGGTC TTAACTAAGA CACTACTGGA TGAGTCACCA
AGTATTGCGC CAAATGGCGG CATGGTGATT TACAGTTCCA TTTATAGAAA ACAAAACGTC
CTTTCGATGG TTTCTATAGA TGGCCGTTTT AAAGCTCGCT TACCAGCGAC AAACGGACGT
GTAAGGGCAC CAGCGTGGTC GCCATTTTTA TAG
|
|---|
| Protein sequence | MLKRWILPLF IACLSFSQIA KAELELVITE GVNSARPIGI VPFKWHGEGK LPQDISAIIS
SDLQRSGKFS PLPTNKMPQT PYKDADINYE AWTKMGVDAI VTGEVKVNAA GKYEVSYKLI
DVVRGQLTKG KSKGLSNSGE LVLTQDHILV NKIATLSKTQ LRKYAHRISD VVYEKLTGEK
GAFLTRIAYV VVNDKSQHPY QLRIADYDGY NERLVLKSKQ PIMSPAWSPD GKKLAYVSFE
NRRSQVFIMN IYTGKRELIA SYPRHNGAPR FSHDGKELAI VLSKTGSLQV YIVNLQTKKM
RQITRGRSNN TEPFWAPDNK SLIFTSDRGG KPQIYRVNLE DGSTKRLTWQ GSQNLGGQIT
PDGKYIVMVN RSETGFNLAK QDLETGAVQV LTKTLLDESP SIAPNGGMVI YSSIYRKQNV
LSMVSIDGRF KARLPATNGR VRAPAWSPFL
|
|---|
| |