Gene VSAL_I1894 details

Gene Information

• Locus tag: VSAL_I1894
• Symbol: ybgC
• ID: 6987438
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2028919
• End bp: 2029323
• Gene Length: 405 bp
• Protein Length: 134 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 643380195
• Product: acyl-CoA thioester hydrolase
• Protein accession: YP_002263290
• Protein GI: 209695361
• COG category: [R] General function prediction only
• COG ID: [COG0824] Predicted thioesterase
• TIGRFAM ID: [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family; [TIGR02799] tol-pal system-associated acyl-CoA thioesterase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGTTT TCAAATGGCC TATCACGGTT TACTATGAAG ACACCGATGC AGGTGGCGTA 
GTTTATCACT CTAATTATTT AAAGTTTTTT GAAAGAGCCA GAACCGAATT ATTACGAGAA 
AAAGGAGTAT CTCAAGGGAT ACTGCTGCAA GAGTCTCTCG GATTTGTGGT TAAACATGTT 
GATATAGATT TTATACAAGG TGCTCGTTTA GATGAGCAGC TCACAGTTGA AACATTCATA 
GAAGAAATTA AAAGGGTATC GCTGACCTTT TGTCAGTTAT TGGTTAATTT TGAGGGTAAA 
GTATTGTGCA AAGCTACAGT TAAGGTAGCC TGTATTGATA ACGCTAAAAT GAAACCAAAA 
GCGATACCAT TATTTATATT ATCGGAGATA TCTTGTGACA GGTGA 

 

Protein sequence

MAVFKWPITV YYEDTDAGGV VYHSNYLKFF ERARTELLRE KGVSQGILLQ ESLGFVVKHV 
DIDFIQGARL DEQLTVETFI EEIKRVSLTF CQLLVNFEGK VLCKATVKVA CIDNAKMKPK 
AIPLFILSEI SCDR