Gene VSAL_I1888 details

Gene Information

• Locus tag: VSAL_I1888
• Symbol: ruvA
• ID: 6989218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2023519
• End bp: 2024139
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380189
• Product: Holliday junction DNA helicase RuvA
• Protein accession: YP_002263284
• Protein GI: 209695355
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0632] Holliday junction resolvasome, DNA-binding subunit
• TIGRFAM ID: [TIGR00084] Holliday junction DNA helicase, RuvA subunit

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.949715
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCGGAC GCCTTCGTGG AAATCTATTA GAAAAACAAC CACCAGAATT ACTCATTGAA 
GTCAGTGGTA TTGGTTATGA AGTTCAAATG CCAATGAGTT GTTTTTATGA ATTACCACCG 
ATTGGTACCG AAGCCATTAT CTATATTCAT TATGTAGTAC GTGAAGATGC TCAATTACTT 
TACGGTTTTA ATACTAAAAA AGAACGAGCG TTATTTAGAG AAGTGATCAA AGCTAACGGG 
GTGGGGCCAA AACTTGGTTT GGCGATACTG TCTGGCATGA CTGCTTCTCA ATTTGTTCAA 
AGTGTTGAGC GTGAAGATAT TTCGACCTTA GTCAAATTAC CAGGTGTTGG TAAAAAAACG 
GCAGAGCGTT TAGTCGTAGA GATGAAAGAT CGCCTAAAAG GGTGGGGAGC GGGTGACTTA 
TTTACTCCAG CAGACACTAC GTCAATGGAT GATGCTTCTG ATTTGATTTC ATCGCCTCAA 
AGCGCACAAG ATGAAGCAGT CAGTGCGCTT ATTTCTTTAG GCTATAAACC AGTGCAGGCG 
TCTAAAATGG TATCTCAAGT CGCAAAACCT GATATGACCA GTGAATCTCT AATTCGTGAA 
TCATTGAAAT CAATGATCTA A 

 

Protein sequence

MIGRLRGNLL EKQPPELLIE VSGIGYEVQM PMSCFYELPP IGTEAIIYIH YVVREDAQLL 
YGFNTKKERA LFREVIKANG VGPKLGLAIL SGMTASQFVQ SVEREDISTL VKLPGVGKKT 
AERLVVEMKD RLKGWGAGDL FTPADTTSMD DASDLISSPQ SAQDEAVSAL ISLGYKPVQA 
SKMVSQVAKP DMTSESLIRE SLKSMI