| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1882 |
|---|
| Symbol | |
|---|
| ID | 6987432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2016302 |
|---|
| End bp | 2017810 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643380183 |
|---|
| Product | membrane protein |
|---|
| Protein accession | YP_002263278 |
|---|
| Protein GI | 209695349 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCAA GAGTGCCTTT TTATTTTCTT ATCTCCCTAC TAATTATTGC AGGACTTACG
TTGAGCTGGC TACGCCACGA TTCATACGGA GTGCCTTGGA CACCAGGTGA GAGAAGCCAA
GTTTGGGATG TAGAAGCCCG AATTCAATTT GATGCAGTAA ATAAACCAGT CAAGGTTTCT
ATGGCTGCAC CACAAACTCA AACAGGTTTT ACTATTGTCG ATGAGAGTGC ATCTTCTCCA
GGCTATGGTA TCGCTTATCT AACAACAAAG CATGGACGCC GAGCTGAATG GACAATTCGT
CAGGCCGACG GACCACAAAC GCTCTATTAT AAAACTCAAA TCTTAGTAGA CCCGCAAGCA
GACTCTGTTA TTCAGCCCCC AGAATCAGAG AAACCTGAAG CCGTCACTTT TGAAGGCCCT
CATGAATCTG CGGCAATCTC ATTATTAGAT CAAGCCAGAG CTCGTTCTTC TGACGATATT
ACGTTAACTC GCGAACTTAT TAAGCAATTT AATGATAAAG ATAACCAAAA TGCGTCTTTG
CTTCTTAATG ACTTAACGAG AGTTCAAGCT ATTTCAAAAC TCTTAAGTTT TGAAAATATC
CATAATAAAG TTATTGGTAC TCTTTGGTTA GAAGATGGTC GTCGTCGTCA ATCTGTTCAG
CATATGATTG AAGTATGGAG TGGCAAAGAC TGGCAGTTGT TTAACCCAGA AACCGGAGAC
CAAGGTCAAC CGGCTAACTT ACTGCTTTGG GACGAATCAA ATGTCTCTCT CTTAGACGTT
GTTGGTGGTA AAAATAGCCA AATCAACTTC TCTATGATTG CACAAGAAAT TTCTCCTACT
GCTGCAACCG AGAAGAAAGT AGAAGCAGAC AACCTGCTAA ACTTCTCTAT CCACAGTCTT
CCCCTTGAAG AGCAATCGAT GTTTAAAACC ATCATGCTTA TTCCAATTGG TGCACTGATG
GTTGTATTCT TACGAGTCAT TATCGGTTTG AAAACATCAG GTACTTTCAT GCCAGTGTTG
ATCGCGGTTG CTTTTGTGCA AACACAATTA ATCACAGGTA TTGTTGGTTT CTTACTGATT
GTTGGTACCG GCTTAATCAT TCGTAGCTAT TTATCCAAAT TAAACCTACT CCTGGTATCT
AGGATATCTG CGGTGATCAT CTCTGTAATC ATGATCATTT CAATCTTCAC GATTGTTGCC
TTTAAGATTG GTTTAACAGC AGGATTAAGT ATTACCTTCT TCCCTATGAT TATCCTTTCT
TGGACTGTAG AACGTATGTC GATTCTATGG GAAGAAGAAG GCTGGAAAGA AGTTGCGACT
CAAGGTGGCG GTTCATTATT AACAGCCGTT CTTATCTACA TCGCAATGAC AAACCCGTTC
GTACAGCACT TAACGTTTAA TTTTATTGGT ATTCAGCTAA TTATTTTAGC CATTATACTG
ATGCTTGGTA ATTATACTGG TTACCGTTTA AGTGAGCTTC GTCGCTTTAA GCCTTTAGCG
GAGGACTAA
|
|---|
| Protein sequence | MPSRVPFYFL ISLLIIAGLT LSWLRHDSYG VPWTPGERSQ VWDVEARIQF DAVNKPVKVS
MAAPQTQTGF TIVDESASSP GYGIAYLTTK HGRRAEWTIR QADGPQTLYY KTQILVDPQA
DSVIQPPESE KPEAVTFEGP HESAAISLLD QARARSSDDI TLTRELIKQF NDKDNQNASL
LLNDLTRVQA ISKLLSFENI HNKVIGTLWL EDGRRRQSVQ HMIEVWSGKD WQLFNPETGD
QGQPANLLLW DESNVSLLDV VGGKNSQINF SMIAQEISPT AATEKKVEAD NLLNFSIHSL
PLEEQSMFKT IMLIPIGALM VVFLRVIIGL KTSGTFMPVL IAVAFVQTQL ITGIVGFLLI
VGTGLIIRSY LSKLNLLLVS RISAVIISVI MIISIFTIVA FKIGLTAGLS ITFFPMIILS
WTVERMSILW EEEGWKEVAT QGGGSLLTAV LIYIAMTNPF VQHLTFNFIG IQLIILAIIL
MLGNYTGYRL SELRRFKPLA ED
|
|---|
| |