| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1869 |
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| Symbol | rnfD |
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| ID | 6989136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2002600 |
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| End bp | 2003655 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380168 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_002263265 |
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| Protein GI | 209695336 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.173921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCTTTT TTATCACTAG CTCACCACAC GCTCACAGTA AAAAGAGCAC TCAAACCATG
ATGAAAATGG TCGCACTCGC GACTATTCCT GGTTTACTAG CTCAAACCTA CTTCTTTGGC
TGGGGGACAT TACTTCAAGT TCTTCTCGCT ATTATTACCG CTATTTTGGC AGAAGCGTTC
GTTTTAAAAT GCAGAAAAAG ACCTTTAGCG CCATACTTAA AAGATAATAG TGCTTTATTA
ACTGGCTTAT TATTAGCTCT GGCCATTCCA CCTCTTTCCC CATGGTGGCT CACTGTTATT
GGTGTGTTTT TTGCCATTGT GATAGCGAAA CATCTGTATG GTGGATTAGG TCAGAATCTA
TTTAATCCAG CAATGGCTGC TTATGTTGTT CTTTTGATTT CATTTCCAGT TCAAATGACC
ACTTGGTTAC CAGCAAAAGA ATTGTTAGTT GAGCACATTA GCTTCATGGA TTCTGTTTGG
TTAATCTTTC ATGGGTTAAG TCAAGATGGG TTCTCTGTAC ATCAACTAAC GATGAACGTT
GATGGAATGA CAATGGCTAC GCCATTAGAT ACAGTAAAAA CAGGATTAAA AGCAGGCTTA
ACCACCAATG AAATTCTATC TGCACCTATA TTTAATGGCT TTGCAGGATT AGGGTGGCTA
TGGGTTAACG TTGGTTTCTT ATTGGGAGGA CTATTTCTTC TGCAACAACG TCTTATTCAT
TGGCACATAC CGGTCAGTTT CTTAGCCAGT TTATTTATCG TGAGTTCTTT GTTCGCAGTA
TTCTCACCAG ATACAACGAC ATCACCAATC TTCAATCTAT TCTCTGGTGC GACAATGTTA
GGTGCTTTCT TTATTGCAAC TGATCCCGTT TCTGCTGCGA CCACAAACAA AGGCCGTTTA
TATTATGGCG CTTTAATTGG ACTATTGGTT TATATGATCC GCTCTTGGGG AGGCTTCCCG
GATGGCGTTG CTTTTGCCGT TCTATTGGCA AACATGTGTG TCCCCCTTAT TGATTATTAC
ACTAAACCAA GAACTTACGG CCATAAGAAA GGATAA
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| Protein sequence | MAFFITSSPH AHSKKSTQTM MKMVALATIP GLLAQTYFFG WGTLLQVLLA IITAILAEAF
VLKCRKRPLA PYLKDNSALL TGLLLALAIP PLSPWWLTVI GVFFAIVIAK HLYGGLGQNL
FNPAMAAYVV LLISFPVQMT TWLPAKELLV EHISFMDSVW LIFHGLSQDG FSVHQLTMNV
DGMTMATPLD TVKTGLKAGL TTNEILSAPI FNGFAGLGWL WVNVGFLLGG LFLLQQRLIH
WHIPVSFLAS LFIVSSLFAV FSPDTTTSPI FNLFSGATML GAFFIATDPV SAATTNKGRL
YYGALIGLLV YMIRSWGGFP DGVAFAVLLA NMCVPLIDYY TKPRTYGHKK G
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