Gene VSAL_I1837 details

Gene Information

• Locus tag: VSAL_I1837
• Symbol: cydD
• ID: 6988369
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1969151
• End bp: 1970923
• Gene Length: 1773 bp
• Protein Length: 590 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643380136
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_002263233
• Protein GI: 209695304
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAAA TACAACAACG CGAGTTAGGA CAATGGCTCA AAGGCCAAAG TAAGCTTGCT 
AAGAAATGGC TCGCCCTATC TATTGGGCTT GGCTTTCTTT CCAGTCTTTT TCTTATCGCT 
CAAGCGGCAC TATTAGCCGA TATTCTGCAC AAGCTCATCA TTGAACAAAC AGATAAGTAT 
GAGTTACTTC CTCAATTCAT CGCCATTTTT GCCATTGTAG GAATTCGAGC AGCTTGCAGT 
TGGGGTCGTG AAGTCGCCGG TTACCGTTGT GGCGAGCATA TTCGAATTCA TATACGCCAG 
CTCATTCTTA ACAAACTCCA AGAATTAGGA CCGGCTTATA TAAAGGGTAA ACCGGCAGGG 
TCTTGGGCTA CGTTGCTATT AGAGCAAGTA GAAGACATGC AAGATTTCTT CTCTCGTTAT 
CTACCGCAAA TGTCGCTTTC TGTCATGATC CCTTTTGTTA TTTTAATCGT TGTGTTTCCT 
CAAAACTGGG TTGCCGGATT AATTTTCTTA TTAACCGCGC CATTAGTGCC CCTCTTTATG 
GCATTAGTAG GAATGGGAGC GGCTGACGCT AACCGCCGAA ACTTTAAAGC ATTACAACGA 
TTATCTGGTC ATTTTTATGA TCGTCTGCAA TCAATGACCA CTATTCGCCT ATTTGACAAA 
ACAGCGCAAG AAACAAAACA TCTTCATAAT GCTTCTGAAA TATTCCGCAA GCGTACAATG 
GAGGTGTTAC GACTCGCCTT TTTATCTTCT GCTGTGCTTG AATTCTTCAC CTCTATCTCA 
ATTGCCCTTG TTGCCGTTTA TTTCGGTTTC ACTTATATCG GTGAGCTTAA CTTTGGTAAT 
TACGGAATAA CAGTGACCTT ATTCACGGGT TTATTTATTC TTATTTTAGC GCCTGAGTTT 
TATCAGCCAT TACGCGATTT AGGAACGTTT TATCACGCAA AAGCTCAAGC CGTAGGCGCT 
GCCGAGTCGA TTGTCGAGTT TTTAGCGATT GATACTAATA CTCAAACGAA TGGTGATAAG 
AAAGTATCTC AATCGACCAC CCTTGATATT GAAGTCACGG ACTTAATCGT CAACAGCCAT 
GACGGAAAAG CATTACTCGG ACCTATCAGT TTTCATTTAC ATGAAAGCTC TCAAACCGCA 
TTGGTTGGTC CAAGTGGCGC AGGGAAAACA AGTTTAATCA ATGCACTTCT TGGATTTTTA 
CCTTACCAAG GCAGTATCAA GATAAATGGT ATTGAGCTAT CTAAGTTAAA CAAAAAAGAA 
TGGTACCAAG AAATAAACTG GGTTGGACAG AATCCAACAT TAGTACATGG AACCATTGAA 
GAGAATATTA CGCTTGGTAA GCAAAGCATA TCTAAAGAAC AATTGGACTC GGTAAGTAAG 
CAAGCTTTTG CTAATGAGTT TATTGATGAA TTAGGTTATC AACACCAAAT ATCTGATCGC 
TCTGGTGGCT TATCTGTTGG TCAAGCTCAG CGTTTAGCAT TAGCTCGAGC TTTATTACAA 
CAAGGACGCC TGTGGATCTT AGATGAACCA ACAGCCAGTC TTGATGCAAA GAGTGAGCAA 
CTTGTAATGC AAAGCTTAAG TCTAGCTACT CAAGGCTTAA CGACTTTAAT GATCACCCAT 
CGCTTAGATC AACTTTATGC AATGGACACG ATTTTAGTCA TGGATAAAGG CCAAGTTGTT 
CAATCAGGTT CATTTGATGA AATTAAAGAC TCTGGTTTAT TTGCAACCAT GCTTGCCGCA 
AAACAACCGA AGCAAGGTGA TCTTGATGCG TGA 

 

Protein sequence

MDKIQQRELG QWLKGQSKLA KKWLALSIGL GFLSSLFLIA QAALLADILH KLIIEQTDKY 
ELLPQFIAIF AIVGIRAACS WGREVAGYRC GEHIRIHIRQ LILNKLQELG PAYIKGKPAG 
SWATLLLEQV EDMQDFFSRY LPQMSLSVMI PFVILIVVFP QNWVAGLIFL LTAPLVPLFM 
ALVGMGAADA NRRNFKALQR LSGHFYDRLQ SMTTIRLFDK TAQETKHLHN ASEIFRKRTM 
EVLRLAFLSS AVLEFFTSIS IALVAVYFGF TYIGELNFGN YGITVTLFTG LFILILAPEF 
YQPLRDLGTF YHAKAQAVGA AESIVEFLAI DTNTQTNGDK KVSQSTTLDI EVTDLIVNSH 
DGKALLGPIS FHLHESSQTA LVGPSGAGKT SLINALLGFL PYQGSIKING IELSKLNKKE 
WYQEINWVGQ NPTLVHGTIE ENITLGKQSI SKEQLDSVSK QAFANEFIDE LGYQHQISDR 
SGGLSVGQAQ RLALARALLQ QGRLWILDEP TASLDAKSEQ LVMQSLSLAT QGLTTLMITH 
RLDQLYAMDT ILVMDKGQVV QSGSFDEIKD SGLFATMLAA KQPKQGDLDA