Gene VSAL_I1836 details

Gene Information

• Locus tag: VSAL_I1836
• Symbol: cydC
• ID: 6987414
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1967437
• End bp: 1969158
• Gene Length: 1722 bp
• Protein Length: 573 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380135
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_002263232
• Protein GI: 209695303
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
• TIGRFAM ID: [TIGR02868] thiol reductant ABC exporter, CydC subunit

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTGATT TACTCCCTTA CATAAAACTA TATAAAAAAC ATTGGTTTGG ACTAACGTTA 
GGCATGCTAC TCAGCTTTGC TACGTTATTT GCTTCCATTG GCTTGTTAAC CGTATCTGGT 
TGGTTTATTT CCGCATCAGC GGTTGCCGGA TTAACCATTG CTCGTGAAAC GTTTAACTAC 
ATGCTTCCTT CTGGAGCAGT ACGTGGTTTC TCTATTGGTA GAACCGCAGG TCGTTGGGGC 
GAACGCGTCG TTAGCCATAA TGCAACGTTC AAATTATTGA CTGAACTTCG TATTTTCTTC 
TTTAAAAAGT TAATCCCATT GATCCCAGGT CGATTCTCTA AGTTACGTGA CGCCGATTTA 
TTGAATCGTC TTGTGGCTGA TGTTGATGCA ATGGATCATG TTTATCTACG CCTGATCAGT 
CCTATTATTG TTGGTACATT AGGCATTATT GGATTAACGG CTTTTCTTGC TTGGTTTGAT 
CTCACTATTG GATTAACGCT TGGATCTATC TTATTTTCAT TATTATTAAT TTGGCCTACG 
TTATTTTATA AGCTCGGAAA AAAGAACGGT GCCGAGCTAA CTCATAACAA AGCCACATTA 
AGAATCAAAA CATTAGACTG GCTACAAGGT AATGCAGAAT TACGTATTTT TGGTGCTGAA 
GAGCAATATC AACAACGTAT TCTCGATGCT CAAGTCGCTC TATTATCAAA TCAACGCCAC 
ATGGCAACGC TTACTGGCTT AGCGAATGGA TTACTATTAC TTGCTAATGG TTGGACGCTA 
CTGTTAATGC TTTGGATATC GGCGGATGGC ATTGCGGGAA TGACCCCTGA CCCAATGGTG 
GCAATGGTCG CTTTTGCTAC GATGGCCAGC TTTGAATTAT TAATGCCGAT TGCTGGTGCT 
TTCCAATATT TAGGTCAGAC GTTAAGTTCT GCTCGTCGAT TAAATGAAAT CATCACAGCC 
ACACCTGATA CTATTTTTGA TGAAAATGGC GTTAGCCAAG CAGTAAAAGG AAATCTAACG 
ATTTCAGATG TTAGCTATCA ATATATGGAT GCTGAAACGG ATGCAATTAA ACATATTTCA 
TTAGATTTAC TTGCCGGGCA AAAAATGGCA ATCGTAGGGC AGACAGGCTC AGGTAAATCG 
ACATTATTAC AACTGCTAAC CCGTCAATGG GATCCTAAAT CAGGAGTAAT CTCTATTGAT 
GGTGTTCAAT TGCCGAAATG GAAGGAATCA AGTTTACGTA ACGCCATGTC CGTGGTTAGT 
CAGCGAGTTG ATATTCTAAA TGGTTCATTA CGTGACAATC TATTGCTTGC AAATGATACT 
GCCACTGACG ATGAATTAAC TCAGGTACTC AATAAAGTTG GTTTAGGCGA TTTAGTATCA 
AATGAAGGAC TGAGTGCTTG GTTAGGTGAC GGAGGCCGTC AATTGTCAGG GGGTGAACGT 
CGTCGTATTG GTATTGCACG CGCGCTATTG CATGATGCCC CTATTGTGCT GCTTGATGAA 
CCAACAGAAG GCCTTGACCA AAAAACAGAA CAACAAATCA TGACCGTGTT AAATGACCAT 
ATAAAACAAA AAACCGTTGT CTTCATTACT CACCGTCTAG TGAACTTAGA AAACATGGAT 
CAAATTTGTT TAATGGACCA TGGCGAAGTG ATAGAACAAG GGACTCATGA AAGTTTACTT 
TCACTTAAGG GTGCTTATCA TCAATTATGG CAACGTTTTT AA 

 

Protein sequence

MRDLLPYIKL YKKHWFGLTL GMLLSFATLF ASIGLLTVSG WFISASAVAG LTIARETFNY 
MLPSGAVRGF SIGRTAGRWG ERVVSHNATF KLLTELRIFF FKKLIPLIPG RFSKLRDADL 
LNRLVADVDA MDHVYLRLIS PIIVGTLGII GLTAFLAWFD LTIGLTLGSI LFSLLLIWPT 
LFYKLGKKNG AELTHNKATL RIKTLDWLQG NAELRIFGAE EQYQQRILDA QVALLSNQRH 
MATLTGLANG LLLLANGWTL LLMLWISADG IAGMTPDPMV AMVAFATMAS FELLMPIAGA 
FQYLGQTLSS ARRLNEIITA TPDTIFDENG VSQAVKGNLT ISDVSYQYMD AETDAIKHIS 
LDLLAGQKMA IVGQTGSGKS TLLQLLTRQW DPKSGVISID GVQLPKWKES SLRNAMSVVS 
QRVDILNGSL RDNLLLANDT ATDDELTQVL NKVGLGDLVS NEGLSAWLGD GGRQLSGGER 
RRIGIARALL HDAPIVLLDE PTEGLDQKTE QQIMTVLNDH IKQKTVVFIT HRLVNLENMD 
QICLMDHGEV IEQGTHESLL SLKGAYHQLW QRF