| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1831 |
|---|
| Symbol | udp |
|---|
| ID | 6987410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1959321 |
|---|
| End bp | 1960079 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643380133 |
|---|
| Product | uridine phosphorylase |
|---|
| Protein accession | YP_002263230 |
|---|
| Protein GI | 209695301 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2820] Uridine phosphorylase |
|---|
| TIGRFAM ID | [TIGR01718] uridine phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAG CAGTATTCCA TTTAGGTGTT ACAAAAGACG ATCTTCAAGG CGCAGAAATG
GCTATCATTC CAGGTGATCC AGCACGTGTT CAGAAAATTG CAGAACAAAT GGAAAACCCT
AAGTTTTTAG CAAGTCACCG TGAATACACT GTGTATCTAG CAGAATTAGA AGGCAAAAAA
ATTGTTGTTT GTTCTACTGG TATCGGTGGT CCATCAACGT CTATTGCTGT TGAAGAGTTA
GCTCAATTGG GTGTGCGTAC CTTCTTACGT GTTGGTACTA CTGGTGCAAT CCAACCGCAT
GTAAATGTAG GTGATATGAT TGTAACGACA GGTTCAGTTC GTTTAGATGG TGCGAGCTTG
CATTTTGCTC CAATGGAATT CCCAGCCGTT GCTGATTTTG ATGTTGCAAC AGCAATGCGT
AAAGCGGTTG TTGACCAAGG CGCGACAGTA CATACCGGTG TTACTGCATC AAGTGATACA
TTCTACCCAG GTCAAGAGCG TTACGATACG TTCTCTGGTC GTGTTGTTAA GCGTTTCCAA
GGTTCTATGC AAGAATGGCA AGACATGGGC GTGTTAAACT TTGAGATGGA ATCTGCAACG
CTATTAACTA TGTGTGCAAG CTCTGGTTTA CGTGCGGGTT GTGTTGCCGG TGTTATTATT
AACCGTACTC AAAAAGAAAC ACCTGATCAC GTGACATTAA AAGAAACTGA AGCTCGTTCA
ATTAAAGTTG TGATTGAGGC GGCTCGTAAT CTTCTATAA
|
|---|
| Protein sequence | MTAAVFHLGV TKDDLQGAEM AIIPGDPARV QKIAEQMENP KFLASHREYT VYLAELEGKK
IVVCSTGIGG PSTSIAVEEL AQLGVRTFLR VGTTGAIQPH VNVGDMIVTT GSVRLDGASL
HFAPMEFPAV ADFDVATAMR KAVVDQGATV HTGVTASSDT FYPGQERYDT FSGRVVKRFQ
GSMQEWQDMG VLNFEMESAT LLTMCASSGL RAGCVAGVII NRTQKETPDH VTLKETEARS
IKVVIEAARN LL
|
|---|
| |