| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1802 |
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| Symbol | hipA |
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| ID | 6988659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1924351 |
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| End bp | 1925673 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643380109 |
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| Product | transcriptional regulator, HipA-like |
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| Protein accession | YP_002263206 |
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| Protein GI | 209695277 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
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| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGTAT TAATTGCATA CATGAATGGT GAGCGTGTTG GAGAATTTAC TAAACTCAGT
AACGGTGCAC ATCAGTTTCA ATACGATAAA TCATGGATAG AAAGTACGGT AGGAAGACCC
CTGTCATTAT CCCTCCCCCT ACAATATCCA AAGATAACCA GTGATTGCGT TATTAATTAC
TTCGACAACC TATTACCTGA TTTGTCAGAA GTCAGAGATC GCATCGTTGC CAGATACCAA
GCTAAATCTC GTCAAACATT CGATTTACTT CATGAAGTTG GTAAAGACAG CGTCGGTGCT
ATTTCTTTAT TAACTAACGA TGAAGAACCA AATACCAAAC AACTGGATTA TGATGTTTTA
ACTCCAGCAC GGCTCAAACA AGTACTCTCA GCCTATCAAT CCAATATTCC ATTAGGAATG
CTAGAAGATG AATCAGACTT TCGAATTTCG GTTGCCGGAG CACAAGAAAA AACAGCGTTA
CTCAAAATAA ATGATGAATG GTGCATACCG AAAGCATCTA CCCCAACAAC GCATATAATC
AAATTACCCA TTGGAAAAAT TCAACAACCT AATGCCACTC TCGATATGAG TGATAGTGTA
GAAAATGAAT ACCTGTGCAT CCAATTAGCT AAGAAGTTAG GATTCAATGT ACCTAATGTT
GAAATACTTC ATTGTGATGG AATAAAAGCC ATTGCTGTAG AACGATTTGA TCGAAAGTGG
ATTAAAAATA ACACCAAGCT ATTAAGATTA CCGCAAGAAG ATATGTGCCA AGCATTTGGA
TTACCCTCAT CAATCAAATA TGAAACTGAT GGAGGCCCAA GTATAAAAAC CATTATGGAT
CTTCTAATGG GCTCAAGCCA ATCACTAAAA GATCGTGATG CTTTTATGCG ATTTCAGGTA
TTTCAATGGT TAATTGGTGC AACAGACGGA CACGCAAAAA ACTTCTCCAT TTTTATTAAT
GCACAAGGCA GTTATCACCT TACGCCCTTT TATGACATTT TATCCGCCTA TCCGATCTTA
GGTGGTAAAG GGATGAATAT CCGCTCATTA AAACTGGCAA TGGGACTAAC TGCATCAAAA
GGAAAGAAAT ACCCTATTGA TAAAATATAC ACACGTCATT TTATTGATAC GGCTAAATCT
GTTGGATTTG ATACTGCGAG AATGGAAGAG ATAATGAAGG AATTTGCGAT AAATATGCCT
AAGTCCATTA AGGAATTAGA AGCAGAATTA CCAAGCGGTT TTCCAAAGGA TATTTCTGGC
AGCATATTCA GTAATGCATT GAGAATGGTA AATAAGATCC GCTTGAGTAA TGATTTTCAG
TAA
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| Protein sequence | MAVLIAYMNG ERVGEFTKLS NGAHQFQYDK SWIESTVGRP LSLSLPLQYP KITSDCVINY
FDNLLPDLSE VRDRIVARYQ AKSRQTFDLL HEVGKDSVGA ISLLTNDEEP NTKQLDYDVL
TPARLKQVLS AYQSNIPLGM LEDESDFRIS VAGAQEKTAL LKINDEWCIP KASTPTTHII
KLPIGKIQQP NATLDMSDSV ENEYLCIQLA KKLGFNVPNV EILHCDGIKA IAVERFDRKW
IKNNTKLLRL PQEDMCQAFG LPSSIKYETD GGPSIKTIMD LLMGSSQSLK DRDAFMRFQV
FQWLIGATDG HAKNFSIFIN AQGSYHLTPF YDILSAYPIL GGKGMNIRSL KLAMGLTASK
GKKYPIDKIY TRHFIDTAKS VGFDTARMEE IMKEFAINMP KSIKELEAEL PSGFPKDISG
SIFSNALRMV NKIRLSNDFQ
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