| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1762 |
|---|
| Symbol | |
|---|
| ID | 6987350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1874557 |
|---|
| End bp | 1875639 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643380071 |
|---|
| Product | putative peptidase |
|---|
| Protein accession | YP_002263170 |
|---|
| Protein GI | 209695241 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1994] Zn-dependent proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0051203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGT TATCCATTGA TTTTCTTGGA CAGCCATTGC GTTTAGAAGG CTCAATGGCT
GGCTGGCAGC AAGTGTTTTG GAGTAATACA TTAGTTGCTC AACAGGCGGC ATCCGCGGAT
CATCAAGATC TATTTATACA CGAATTTAAA TTGAATCAAG GTGAGACGAT AGTAACGTGT
CGTTTAGAAG TGAAAGTTAC TTGGCAACCA TTTTTGATCG AGTATCGTGC AAGTGTTGAT
GACCAGTTGA TCGCAGAAGG CTCTCGTAAT ACAAAAGACA TTGAGCAACA AGTTCCACAT
GAGCCAATAA AAGCAGAGCG CCGGTTTAGT TTGATCGGTC TTGTGTCACT AGGCATGAAA
GCATTAAAAA GCGTTAAACT GGTTAAAGTT GTATTAGCGT CAGCCAGTAT CGCGGCTTAC
TCATGGTTAT TTTCTATTGA ATTTGCATTA TCACTGATAG CTTGCCTAGT GTTTCATGAA
TACGGTCATA TTCGTGCGAT GAAATACTTT GGAATGAAGA CGAAAGGGAT TTATTTGATC
CCATTTTTAG GCGGATTAGC ACTCAGTGAT GAGAAAATAA ATACACGTTG GCAAGATGTT
GTTATTTCGA TTATGGGGCC ATTTTTTGGT TTGATACTGT CGCTGATTTT AATTGTCGTG
TATTGGATAA CAGGAGAGAT GTTCTTTGCG GGTCTTGCTG TATTTAATGC ATTCTTAAAC
CTCTTTAATT TACTGCCCAT TTTGCCCTTA GACGGTGGAC ACGTATTAAA AAGTGTTAGC
TTCTCTATGA ACAGTAAAGT TGGTATTGCA TTGTGTGCTT TAGCCGCCAT TGGTGGGATA
ATATTAAGTT ACCAATTAGG CTTCGCTCTT TTTGGTTTCC TACTTATTAT GGGGAGCTTA
GAAATCGTCT TTGAGTGGAA GCAACGTCAT CATAGTCATT TGTTGCCTTT AGATAAATAT
GGACAAATTG TTTCATCGGC TTGGTATGTC GGGCTTGTAA GCTCGTTAGT TGGTATTATT
TGGTATTTTG CAAGTAGCGG AGATGCTTTA TTACAACTGC CAATGCAGAT TTTAGGAACG
TAA
|
|---|
| Protein sequence | MELLSIDFLG QPLRLEGSMA GWQQVFWSNT LVAQQAASAD HQDLFIHEFK LNQGETIVTC
RLEVKVTWQP FLIEYRASVD DQLIAEGSRN TKDIEQQVPH EPIKAERRFS LIGLVSLGMK
ALKSVKLVKV VLASASIAAY SWLFSIEFAL SLIACLVFHE YGHIRAMKYF GMKTKGIYLI
PFLGGLALSD EKINTRWQDV VISIMGPFFG LILSLILIVV YWITGEMFFA GLAVFNAFLN
LFNLLPILPL DGGHVLKSVS FSMNSKVGIA LCALAAIGGI ILSYQLGFAL FGFLLIMGSL
EIVFEWKQRH HSHLLPLDKY GQIVSSAWYV GLVSSLVGII WYFASSGDAL LQLPMQILGT
|
|---|
| |