Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1729 |
Symbol | |
ID | 6987334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1840008 |
End bp | 1841789 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643380044 |
Product | oligopeptidase F |
Protein accession | YP_002263143 |
Protein GI | 209695214 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0341754 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCTC CTAGCTGGGA TCTTTCCGTT GCTTTTGAAT CATTAAATGA TCCAAAATTA GATGCGACAA TCATTACTAT TGAACAAAAA ATAAAGACGC TTTTCAGTTC GACTGCTGAA TTACATGCTA GTGCATTACA ACAAGCGATT TTAGACAGAG AATCCATTTC AGTGTTACTT GCAACAGTGG CGAGTTATGG TAATTGTATT GCTTCTGTTG ATGCGTCTGA TAACCAAGCA AAAGCGCTTG TGAATAAGAT GAATAAATTG TCATCCGAAT TATCACAAGC TTTTAGCCCT TATCTTGATG CGATAGTGAA TTCACCAACC GCTTTATTTG AAGAGGTTCT ATCATACAGT GAAGAATTAG AAGCCCAACG TTTCTTATTA GAAGAAGAAA GGAAGCTTAT TGCGACACGT TTGAGTGTTA AAGAAGAGCA GCTTCTCTCT GCTATGAGTG TTGATGGTAA AAATGCATGG GGCCGTTTAT ACGATAATAT TACCGGTTCT ATGACCGTGA CGTTAGCGCT GTCTAATGGA GAGCAAGAAA CCATTGGTTT ATCGCAAGCT GCAAGTATTT TATACGGAAG TGATGAAAAC CGTAGAGAAC CAGCATGGCG AGCAATTCAA TTAGCAATGA AACAAAATCA AGAGAGTTTG TCTGCCATTT TAAATGCGTT ATCGGGGTGG CGGTTAGCTG AATATGAAAA ACGAAGCGCA ACAGCGTCAG TACATTTTTT GGAGTCAAGT TTACATGGTA GCCGTATAGA ACAAGCAACA TTAGATAGCA TGATGTCAGT AGCAAAGAAA AATCGTGCTG TAGGACAAAA AGCGGCACGT TTAATGGCTA AAATGTTTGG TACTGAGAAG CTAACACCTT GGGATCAACT TGCTTCAATG CCTCCATTGA GTGGAAGTGC TTCTACTTAT TCTTTTGATG AAGCGATAGA TATCATTAAA GAGGCATTTG GCAGCGTATC TCAAGAAATG GCCGATTTTG TGGCTCTGAT GGTAACTAAT GGTTGGATCG ATGCAGCACC GCAATCGACT AAACGTCTTA GTGCGTATTG TACTAAGTTT GCAGATTCGC GCACACCTCT AGTCTTTATG ACGTGGGGTG ACAGTATGTC GGATGTATTA ACGCTTGCTC ATGAATTAGG TCATGCATTC CATAATTGGG TAATGCGAGA CATGCCTTTA TGTAAAACAA AGTACCCAAT GACATTAGCG GAAACCGCCT CTATTTTTGC AGAAAATGCA GTTCGTGATG CGTTATTGGC AAAGGCGAAA ACAAAAGAAG ATAAAATAGA AATGTTATGG GAGGAGTTAT CTTCCGCTTT AGCATTAACG ATAAATATTC CAGTACGTTA TGAATTTGAA AAATCATTTT ATGAACAACG CTCAACTCAG GAGTTAGGGC CAGAGCAACT GTCAGAGTTA ATGAGTAAAA CGTGGAATGA TTGGTATGGT GATTCAATGT CAGAACCTGA TTCATTATTC TGGGCAAGTA AATTACATTT CAGCATTCCT GAGGTGAGTT TTTATAATTA CCCGTATTTA TTTGGTTATC TATTTAGCAT CGGTGTATAC GCACAACGAG AAGCAAAAGG GGATAGCTTT TATCGTGATT ATGTTAATTT ATTGCGTGAT ACTGGCTCAA TGCGTGCAGA AGACGTCGTG AATAAGCATT TGCAAATGGA TTTAACGAAA GAGTTTTTTT GGCAGCAGAG TTTGGATAGG GTAAGTAAAC AAATTGATGA ATTTGAGCGA TTGATTGGAT AG
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Protein sequence | MTAPSWDLSV AFESLNDPKL DATIITIEQK IKTLFSSTAE LHASALQQAI LDRESISVLL ATVASYGNCI ASVDASDNQA KALVNKMNKL SSELSQAFSP YLDAIVNSPT ALFEEVLSYS EELEAQRFLL EEERKLIATR LSVKEEQLLS AMSVDGKNAW GRLYDNITGS MTVTLALSNG EQETIGLSQA ASILYGSDEN RREPAWRAIQ LAMKQNQESL SAILNALSGW RLAEYEKRSA TASVHFLESS LHGSRIEQAT LDSMMSVAKK NRAVGQKAAR LMAKMFGTEK LTPWDQLASM PPLSGSASTY SFDEAIDIIK EAFGSVSQEM ADFVALMVTN GWIDAAPQST KRLSAYCTKF ADSRTPLVFM TWGDSMSDVL TLAHELGHAF HNWVMRDMPL CKTKYPMTLA ETASIFAENA VRDALLAKAK TKEDKIEMLW EELSSALALT INIPVRYEFE KSFYEQRSTQ ELGPEQLSEL MSKTWNDWYG DSMSEPDSLF WASKLHFSIP EVSFYNYPYL FGYLFSIGVY AQREAKGDSF YRDYVNLLRD TGSMRAEDVV NKHLQMDLTK EFFWQQSLDR VSKQIDEFER LIG
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