| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1700 |
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| Symbol | hrpA |
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| ID | 6987310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1795434 |
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| End bp | 1799330 |
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| Gene Length | 3897 bp |
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| Protein Length | 1298 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380022 |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_002263122 |
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| Protein GI | 209695193 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTCAAT CAAATCAAAA CTCAGCAGGT GCACTTAGAA AAGCACTGAG TGAATGTATG
ATCCGTGATC GTTTCCGCCT AAGCAAACGC ATTCAAGGCG CATCACGCAT TAAAAATGAA
GAAGCAAGAA ATGCGGTGTT TGATGAAATC GCATTAGACA TCGCAAAATC AATGCAAATC
GCGAATAACC GCGAAATGGA TCGCCCAACA ATCCAGTACC CAGAACAATT GCCAGTCAGT
CAGAAAAAAG ATGACATTGC TGAAGCGATT GCAAATAACC AAGTAGTTAT TGTTGCCGGT
GAAACCGGTT CGGGTAAAAC CACTCAGTTA CCAAAGATTT GTTTGGAATT AGGTCGTGGT
AAGTTTGGTA ATATTGGTCA CACTCAGCCA CGTCGCTTAG CGGCACGTTC GGTTGCGGAT
CGCATTGCCG AAGAAATGGA AACAGAGCTT GGTAGCCATG TTGGTTATAA AGTTCGATTC
AACGATAAAG TATCAGAGCG TACGCAAGTT AAATTGATGA CTGACGGTAT CTTACTTGCT
GAGATTCAAA GTGATCGTTA TTTAAATCAA TACGATACGA TTATTATCGA TGAAGCGCAT
GAGCGTAGTT TAAACATCGA TTTTATCATG GGCTATTTAC GTGAATTATT GCCAAAACGC
CCAGATTTAA AAATCATCAT TACGTCAGCA ACCATTGATC CAGAACGCTT TTCAAAACAT
TTTAACAATG CACCTATCAT TGAAGTATCG GGCCGAACCT TCCCTGTAGA AACTCGTTAC
CGTCCCATCG TTGAAGACGG AGATGATACT GACAGAGATC AATTAGAAGG CATTTTTGAT
GCAGTTGATG AACTGTGTGC AGAAGGGCTA GGGGACATTC TCTTGTTTAT GACGGGTGAG
CGAGATATTC GTGATACCGC AGAAGCGTTA GAGAAACGTA ACTTACGAGA CACTGAAATT
GTGCCTCTAT ACGCACGTTT GTCTTCTCAA GAGCAAAATC GAGTTTTCCA GTCTCATGCT
GGTCGTCGAA TTGTATTGGC AACCAACGTG GCAGAAACGT CGTTAACCGT TCCTGGTATC
AAGTATGTCA TTGACCCAGG TACGGCGCGT ATTAGTCGCT ATAGTTATCG AACTAAAGTT
CAGCGCTTGC CGATTGAAGC GATCTCTCAA GCCAGTGCGA ATCAGCGTAA AGGTCGTTGT
GGTCGTGTGT CGGAAGGTGT GTGTATTCGT CTGTATTCAG AGGAAGACTT TGTTGCTCGC
CCTGAATTCA CCGATCCTGA AATTTTACGA ACTAACTTAG CCTCTGTTAT TTTACAAATG
ACGGCATTAG GTTTAGGCGA CATTCAAGCA TTCCCATTTG TAGAAGCGCC TGATAATCGA
AATATTCAAG ATGGTGTGAA ACTCCTTGAA GAGCTAGGTG CGATTAATGC TGAGATAAGT
GATCCTAAAA AACGCTTAAC GAAAGTTGGT CGTGAATTGG CGCGTTTGCC TATCGATCCA
CGTTTGGCTC GAATGGTACT TGAAGCGCCG AATCAAAATG CATTGCAAGA AGTGATGATC
ATTGCGGCGG CACTATCGAT TCAAGATCCA CGAGAGCGTC CAAGTGATAA GAAACAAGCG
TCGGATGAAA AGCACAAACG TTTTAATCAT GAAGATTCTG ATTTCTTAAC ATTTGTAAAT
ATTTGGCAGT ATGTAAAAGA GCAACAGAAA GAGCTATCTA GCAACTCGTT TAGAAAGCAA
TGTCGCAAAG ATTACTTAAA CTATTTACGT ATTCGTGAAT GGCAAGATGT GCATTATCAA
TTAACTCAAG TAATGAAAGA GCTTAATTAT AAAGTGAATC AAGAGGCTGC AGGGTATCAA
GGCGTTCATA CGGCTATTTT AGCTGGCATG CTTTCTCATA TTGGTCAAAA AGATCAAGAG
AAGAATGAAT ACCAAGGTGC ACGTAATGCA CGCTTCCATA TATTCCCAGG ATCTGGTTTA
TTTAAAAAGC AGCCTAAATG GGCAATGGTG GCAGAGCTAG TTGAAACTTC AAAGTTATGG
GGTCGAATTG TTGCAAAAAT TCAACCTGAA TGGATTGAAC CTCTAGCACC ACATTTAATT
AAACGCAGTT ACAGCGAGCC ACATTGGTCG AAAAAATCTG CCGCAGTTAT GGCGTATGAG
AAAGTGACTA TTTACGGCAT TCCAATTGTC GTGAAGCGTC AAATTAACTA CGGTACGATT
GATGCGCCAG TGTGTCGTGA AATCTTTATT CGCTCAGCGT TAGTTGAAGG GGATTGGAAT
ACGAATCATA AGTTCTTTAA GCAGAACCGT AAATTGTTGC AAGAAGTTGA AGAGCTAGAG
CATAAATCTC GTCGTCGCGA TCTATTGATT GATGATGATC AGCTTGCCGA ATTTTATGAC
CAACGAGTAA ATACGGATGT GGTTTCTGGC CGCCATTTTG ACTCGTGGTG GAAAACCGCC
CAAAAAGAGA CACCAGATTT ACTTAATTTT GAAAAAGAGA TGTTGTTCCG CAATGATGCA
AGTCATGTGA CGGATCTTGA TTATCCAAAT TTCTGGCATC AAGGTAACCT AAAGCTGAAG
TTAAGCTATC AATTTGAACC GGGGCAAGAT AGTGACGGTG TCACGGTTCA CGTGCCATTA
CCGATTTTAA ATCAAGTGAC GACCGAAGGG TTTGATTGGC AGATCCCCGG TTTACGTCAT
GAAATGATCG TTGCTTATAT TAAATCGTTA CCAAAAACAC TTCGTCGTAA CTTTGTGCCT
GCGCCAAATT ATGCTGATGC ATTTTTATCA CGTATAACAC CATTTGATAT GCCATTACTC
GACAGCCTTG AAAAAGAGCT GCGTAGAATG ACGGGTGTTG CTGTATTGCG TGAAGATTGG
AAACTAGAAC AAATCCCTGA TCACTTGAAG GTGACTTACA GAGTGGTTGA TCACCATAAC
CGTAAGTTAA AAGAAAGCCG TGATCTTTAC GATTTAAAAG ATGGCTTAAA AGATAAAGTA
CAAGAAACGT TATCTCAGGT CGCTGATGAC GATATTGAGC AAGCGGGTTT AAAAACGTGG
AGCTTTGGTG AACTACCTGC ACTTTATACT CAGAAACGTG GTGGCTTTGA AGTTAAGGCG
TATCCTGCGA TTGTAGATAG TAAAGACAGT GTTGGGATTA AGTTGTTTGA AACAGAAGAA
GAACAACATA ATGCAATGAA AGCAGGGCAA CGCCGATTGA TCTTGTTGAA TGTTCCGTCA
CCGATTAAAT ATTTACGTGA CAACTTGCCA AACAAGTCAA AATTAGGCCT ATACTTCAAT
CAGTATGGTC GAGTCTTGGA CTTAATTGAT GATTGTATTG CGTGTGGCGT TGATAAATTA
ATTGACGATA AAGGTGGCCT TGTTTGGGAA CCTGAAGCGT TTGATAATAT GAAAGAACAC
ATTCGAGCGG AACTGGGCGA TACGGTTGTG GAGATCGCTA AATTAGTCGA AACGATTTTA
ACGACGGCTT TCCAAATACA GAAGAAGCTA AAAGGTCGTG TTGATCTAAG TATGGCGTTT
GCGTTGTCTG ATATTAAATC TCAAATTGAA AACCTGATTT TTAAAGGTTT TGCAACAGAA
TGTGGTTGGA AGAGATTGAC GGATATCCAT CGTTATATGA AAGCGATCGA ACGTCGAATG
GAGAAGTTAC CGATTGATCC AACTCGAGAT CGTGCTCATT TATTGAAAGT TGACAGTGTT
AACAATGAAT ACAAAGAATT GTTAAACAAG ATCCCGAAAG GGCAGCCAAT ACCCGATAAA
GTAAAAGACA TTCGTTGGAT GATAGAAGAG CTTAGAGTAA GTTATTTTGC TCAACAACTT
GGTACACCAT ACCCTGTTTC GGACAAACGA GTGAAAAACG CCATTGCTGA TTGTTAG
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| Protein sequence | MSQSNQNSAG ALRKALSECM IRDRFRLSKR IQGASRIKNE EARNAVFDEI ALDIAKSMQI
ANNREMDRPT IQYPEQLPVS QKKDDIAEAI ANNQVVIVAG ETGSGKTTQL PKICLELGRG
KFGNIGHTQP RRLAARSVAD RIAEEMETEL GSHVGYKVRF NDKVSERTQV KLMTDGILLA
EIQSDRYLNQ YDTIIIDEAH ERSLNIDFIM GYLRELLPKR PDLKIIITSA TIDPERFSKH
FNNAPIIEVS GRTFPVETRY RPIVEDGDDT DRDQLEGIFD AVDELCAEGL GDILLFMTGE
RDIRDTAEAL EKRNLRDTEI VPLYARLSSQ EQNRVFQSHA GRRIVLATNV AETSLTVPGI
KYVIDPGTAR ISRYSYRTKV QRLPIEAISQ ASANQRKGRC GRVSEGVCIR LYSEEDFVAR
PEFTDPEILR TNLASVILQM TALGLGDIQA FPFVEAPDNR NIQDGVKLLE ELGAINAEIS
DPKKRLTKVG RELARLPIDP RLARMVLEAP NQNALQEVMI IAAALSIQDP RERPSDKKQA
SDEKHKRFNH EDSDFLTFVN IWQYVKEQQK ELSSNSFRKQ CRKDYLNYLR IREWQDVHYQ
LTQVMKELNY KVNQEAAGYQ GVHTAILAGM LSHIGQKDQE KNEYQGARNA RFHIFPGSGL
FKKQPKWAMV AELVETSKLW GRIVAKIQPE WIEPLAPHLI KRSYSEPHWS KKSAAVMAYE
KVTIYGIPIV VKRQINYGTI DAPVCREIFI RSALVEGDWN TNHKFFKQNR KLLQEVEELE
HKSRRRDLLI DDDQLAEFYD QRVNTDVVSG RHFDSWWKTA QKETPDLLNF EKEMLFRNDA
SHVTDLDYPN FWHQGNLKLK LSYQFEPGQD SDGVTVHVPL PILNQVTTEG FDWQIPGLRH
EMIVAYIKSL PKTLRRNFVP APNYADAFLS RITPFDMPLL DSLEKELRRM TGVAVLREDW
KLEQIPDHLK VTYRVVDHHN RKLKESRDLY DLKDGLKDKV QETLSQVADD DIEQAGLKTW
SFGELPALYT QKRGGFEVKA YPAIVDSKDS VGIKLFETEE EQHNAMKAGQ RRLILLNVPS
PIKYLRDNLP NKSKLGLYFN QYGRVLDLID DCIACGVDKL IDDKGGLVWE PEAFDNMKEH
IRAELGDTVV EIAKLVETIL TTAFQIQKKL KGRVDLSMAF ALSDIKSQIE NLIFKGFATE
CGWKRLTDIH RYMKAIERRM EKLPIDPTRD RAHLLKVDSV NNEYKELLNK IPKGQPIPDK
VKDIRWMIEE LRVSYFAQQL GTPYPVSDKR VKNAIADC
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