| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1584 |
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| Symbol | potD |
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| ID | 6988997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1694251 |
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| End bp | 1695294 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643379916 |
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| Product | spermidine/putrescine-binding periplasmic protein precursor (SPBP) |
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| Protein accession | YP_002263016 |
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| Protein GI | 209695087 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00366918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGT GGACAACTCT CGTCTCTACA GGACTGTGCG CTGCAGCCTT AATCGCTGGT
AATGCACAAG CTGCAGATAA AGAGCTCTAT TTTTATAACT GGTCAGAATA CATTCCTAAC
GAAATTTTAG AAGACTTTAC AAAAGAAACT GGTATTAAAG TCTATTATTC AACTTATGAG
TCTAATGAAA GCATGTACGC TAAATTAAAA ACTCAGGGTT CTGGATATGA TCTAGTCGTT
CCTTCTACTT ACTTTGTGTC TAAAATGCGC AAAGAAGGCA TGCTACAAAA AATTGATAAA
ACAAAACTGC CGCATTTTAA AGATTTAGAC CCAAATTACT TAAATAAACC ATTTGATCCA
AACAATAACT ATTCTATCCC ATACATTTGG GGAGCGACGG GTATTGGCGT CAACGCTGAT
ATGATGAACC CTGCAGATCT TCATTCTTGG AATGATTTCT GGGATGAGAA ATGGGAAGGT
CAGTTAATGA TGATGGATGA CTCTCGTGAA GTGTTCCATA TCGCATTAAC TAAACTTGGT
TATTCAGGAA ATACAACAAA CCCAGATGAA ATTAAAGCGG CTTATGAAGA GCTTAAAAAA
CTAATGCCAA ATGTATTAGT CTTTAACTCT GATTTCCCAG CAAATCCATA CCTTGCTGGT
GAAACAAGCG TAGGTATGCT TTGGAATGGC TCAGCTTATA TGGCTCGTGA AGAAGGGGCA
AACATTCAGA TCGTATGGCC AGATAAAGGC ACGATTTTCT GGATGGACAG CTTAGCTATC
CCATCAGGAG CTAAAAACAT CGACGCGGCA CACCAAATGA TGGATTTCTT ACTTCGTCCA
GAGAACGCAG CTAAAATTGC TTTAGAGATT GGTTACCCTA CGCCAGTTAA ATCAGCATAT
CCTCTTCTTC CTAAATCGTT TGCAAACGAT CCAAACATCT TTCCACCACA AGAAGTGATG
GACTCAGGTG AATGGCAAGA TGAAGTCGGT AAAGCAAGCG CACTTTACGA TGAGTATTTC
CAACGCCTAA AAGTTGATAT GTAA
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| Protein sequence | MKKWTTLVST GLCAAALIAG NAQAADKELY FYNWSEYIPN EILEDFTKET GIKVYYSTYE
SNESMYAKLK TQGSGYDLVV PSTYFVSKMR KEGMLQKIDK TKLPHFKDLD PNYLNKPFDP
NNNYSIPYIW GATGIGVNAD MMNPADLHSW NDFWDEKWEG QLMMMDDSRE VFHIALTKLG
YSGNTTNPDE IKAAYEELKK LMPNVLVFNS DFPANPYLAG ETSVGMLWNG SAYMAREEGA
NIQIVWPDKG TIFWMDSLAI PSGAKNIDAA HQMMDFLLRP ENAAKIALEI GYPTPVKSAY
PLLPKSFAND PNIFPPQEVM DSGEWQDEVG KASALYDEYF QRLKVDM
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