| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1582 |
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| Symbol | potC |
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| ID | 6988995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1692156 |
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| End bp | 1692926 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643379914 |
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| Product | spermidine/putrescine ABC transporter membrane protein |
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| Protein accession | YP_002263014 |
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| Protein GI | 209695085 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.147817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGACGCG CAATAAAAAT CAGCTTTATG AGTTTGGTGT ATATATTCCT ATACCTACCA
ATCATCGTTT TGATTGTAAA CTCATTTAAC GCAAGTAAAT TTGGCATGAA ATGGGGTGGA
TTTACCACCA AATGGTATGA AGCGTTAGTC AATAATGACA GCTTAATGCA AGCTGCTTGG
CATTCAATTA CGATTGCCGT AATTTCAGGC ACCGCTGCAA CCATTATTGG TAGCTTAACT
GCCGTAGCCT TATTTCGTTA CCAGTTTAAA GGCAAAAAAT TTGTTAACGG TTTATTGTTC
ATCGTCATGA TGTCACCAGA TATTGTGATG GCTATTTCAC TCTTGGCTAT CTTCTTAGTG
ATTGGATTTG AACTTGGATT TTTTACACTA TTAATTTCTC ACATTACTTT CTGTCTTCCC
TTCGTGGTAG TTACGGTATA CAGCCGTTTG AAAGGGTTTG ATGTAAAAAT GTTAGAAGCA
GCACGAGATC TAGGCGCTAG CGAATGGGTT ATCTTAAAAC AAATTATTTT ACCTTTAGCT
AAACCTGCGG TGGCTGCTGG CTGGTTATTA AGCTTCACAT TGTCACTGGA TGACGTGATT
ATCAGTTCGT TTGTAACAGG ACCAACCTAT GAGATCTTAC CACTGAAAAT CTATTCAATG
GTAAAAGTAG GTATTTCACC TGAAGTAAAT GCCCTAGCAA CCGTCATGTT AATCGTATCA
CTTGCTTTAG TTGTGCTATC ACAAGTGCTA GCAAGAGAGA AAATAAAGTA A
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| Protein sequence | MGRAIKISFM SLVYIFLYLP IIVLIVNSFN ASKFGMKWGG FTTKWYEALV NNDSLMQAAW
HSITIAVISG TAATIIGSLT AVALFRYQFK GKKFVNGLLF IVMMSPDIVM AISLLAIFLV
IGFELGFFTL LISHITFCLP FVVVTVYSRL KGFDVKMLEA ARDLGASEWV ILKQIILPLA
KPAVAAGWLL SFTLSLDDVI ISSFVTGPTY EILPLKIYSM VKVGISPEVN ALATVMLIVS
LALVVLSQVL AREKIK
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