Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1563 |
Symbol | ctaD |
ID | 6987200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1675242 |
End bp | 1676672 |
Gene Length | 1431 bp |
Protein Length | 476 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643379895 |
Product | cbb3-type cytochrome c oxidase subunit I |
Protein accession | YP_002262995 |
Protein GI | 209695066 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.123879 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCAAT TACAGCAGCA TGAACAAAAC TACAACTATA CCGTTGTTCG CCAATTCACC TTAGTTACCA TTCTATGGGG TATTGTTGGC ATGGGTGTAG GTGTATTAAT TGCCGCTCAA TTAGTCTGGC CGCAACTGAA TTTTGACACA CCATGGCTTA CGTATAGCCG TTTGCGTCCT CTGCATACTA ATGCAGTGAT TTTCGCATTC GGTACAAGTG CCCTATTTGC AACATCTTAT TATGTTGTTC AGCGTACTTG TCAAACACGT TTGTTTGGTG GTCCATTAGT TGCGTTCACC TTCTGGGGAT GGCAAGCAAT TATCTTAGCA GCAGCAATTT CGTTGCCTCT AGGAATGACA TCAGGAAAAG AATATGCAGA ATTAGAGTGG CCGATCGATA TCGCTATCAC TTTAGTTTGG GTGGCTTATG CCATTGTATT CTTTGGAACT CTGTTTAAAC GTAATACTTC TCATATTTAC GTTGCAAACT GGTTCTTTGG AGCCTTCATT TTAACCGTTG CCGTTCTTCA TATTGTGAAT AGCCTTGCTG TTCCAGTATC ACTGACTAAA TCATATTCGA TTTATTCTGG TGCGGTAGAT GCGATGGTTC AATGGTGGTA TGGCCATAAC GCAGTAGGTT TCCTATTGAC TGCTGGCTTC TTAGGAATGA TGTACTATTT CGTACCAAAA CAAGCAGAAC GTCCAGTTTA TTCTTACCGT TTATCTATTG TTCACTTCTG GGCATTAATA TCACTTTATA TCTGGGCTGG TCCTCACCAC TTACATTATA CCGCTCTACC TGACTGGACT CAGTCTTTAG GTATGGTGAT GTCATTGGTT CTATTCGCAC CGTCTTGGGG CGGAATGATC AATGGTATAA TGACGTTATC TGGTGCTTGG CATAAGCTAC GTTATGACCC TATCCTTCGA TTCTTAGTCG TTTCTTTATC GTTCTATGGT ATGTCTACCT TTGAAGGTCC GATGATGGCG ATTAAATCAG TTAACGCACT CTCTCATTAT ACTGACTGGA CTATCGGTCA TGTTCATTCT GGTGCGTTAG GTTGGGTTGC TATGGTAACG ATTGGTTCAC TGTACCACTT AATTCCTAAG CTGTTTGGTC AAGAGCGCAT GTACTCTGTA TCACTCATCA ATGTTCATTT TGGGTTAGCG ACAATTGGTA CTGTTCTTTA TATCGTGGCA ATGTGGATTT CAGGTGTGAT GCAAGGTCTA ATGTGGCGTG CGGTTAACGC TGATGGCACA TTAACGTATA GCTTTGTTGA ATCATTAGAA GCCTCTTACC CATTCTATTT CGTTCGTTTT GTTGGTGGTT TAATCTTCCT TTCAGGTATG TTCCTACTTG CATATAATGC ATATAAGACC ATTTCTTCAC CGAAGAATAG CCTAAAAGCA ATTCCTCAAC CGGCACAATA A
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Protein sequence | MSQLQQHEQN YNYTVVRQFT LVTILWGIVG MGVGVLIAAQ LVWPQLNFDT PWLTYSRLRP LHTNAVIFAF GTSALFATSY YVVQRTCQTR LFGGPLVAFT FWGWQAIILA AAISLPLGMT SGKEYAELEW PIDIAITLVW VAYAIVFFGT LFKRNTSHIY VANWFFGAFI LTVAVLHIVN SLAVPVSLTK SYSIYSGAVD AMVQWWYGHN AVGFLLTAGF LGMMYYFVPK QAERPVYSYR LSIVHFWALI SLYIWAGPHH LHYTALPDWT QSLGMVMSLV LFAPSWGGMI NGIMTLSGAW HKLRYDPILR FLVVSLSFYG MSTFEGPMMA IKSVNALSHY TDWTIGHVHS GALGWVAMVT IGSLYHLIPK LFGQERMYSV SLINVHFGLA TIGTVLYIVA MWISGVMQGL MWRAVNADGT LTYSFVESLE ASYPFYFVRF VGGLIFLSGM FLLAYNAYKT ISSPKNSLKA IPQPAQ
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