Gene VSAL_I1544 details

Gene Information

• Locus tag: VSAL_I1544
• Symbol: prc
• ID: 6989014
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1647271
• End bp: 1649289
• Gene Length: 2019 bp
• Protein Length: 672 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 643379878
• Product: carboxy-terminal protease
• Protein accession: YP_002262978
• Protein GI: 209695049
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0793] Periplasmic protease
• TIGRFAM ID: [TIGR00225] C-terminal peptidase (prc)

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTGTC GATTTAGAGT CTCGCTGATT GCTGCTGGCG TAATGCTAGC AGCGTCTGCA 
CACGCACTTG AAGCTAAGGT TCTTGAAGCC AAGTATTCAG AAACGGACTT ACCTGTATTA 
GCGGCTGAAA CTCAGCACGC GACAGCAAGT AAGCGCGTTA CTTCTCGTTT TACACGTTCT 
CATTATAAGC ATTTCTCATT GAATGATGAC TTCTCAGTTG CCATTTATGA GCGATATTTA 
GACATGCTCG ATTATAATCG AAACGTGTTT ATTCAAGCGG ATCTTACCTC TTTCGCTCCA 
TTATCAACCA AATTTGATGA TCAATTAAAA GTGGGTGATA CTCAAGCCGC CTTTGATATT 
TATAACTTAT CACTCAAACG TCGTTTTGAG CGTTACGTTT ATGCATTGTC TTTATTAGAT 
AAAGAGTTTG ATTATACTGT TGATGAATCT TTTGAGTTAG ATCGCTCTGA CGCGGCATGG 
CCAAAAGATG ACGCTGAGTT AAATGAACTT TGGCGTAAAC GTGTTAAATA TGATGCGCTT 
AACTTGTCTA TGACAGGAAA AGATTGGCCT GAAATCCAAA AGATGTTGGG CAAGCGTTAT 
AATAATGCGT TAAAGCGTTT GACTCAAAGT CACAACGAAG ATGCGTTCCA ACTTTACATT 
AATGCATTTG CTCGTGAAGT TGATCCTCAT ACTAGCTATT TATCCCCACG AAATGCTGAA 
CAATTCCAAT CTGAAATGAA TCTTTCATTA GAAGGTATTG GTGCGGTATT GCAAGCGACC 
GATGACTATA CTGTTATTCG ATCTCTCGTG GCTGGTGGTC CTGCACAAAA CAGTAAACAA 
CTTTCAGAAG GTGACCGAAT TATTGGTGTT GCTCAAGAAG GTGAAAAATC TGTTGATGTG 
ATTGGTTGGC GTTTAGATGA CGTTGTTCAA TTAATAAAAG GCCCTAAAGG AACAAAAGTG 
TATCTTGATA TCTTGCCAGA AGGTAAAGAT TCAAAAAGTC ACGTTGTCAC AATTGTTCGA 
GATAAGATTC GTTTAGAAGA AGATAGAGCA GTTAAGTCTG AAGTGATTGA GCAAGACGGC 
AAGAAAATTG GTGTATTAGA AGTACCAAGT TTCTATGTTG GCTTAGCTGA AGACACTAAA 
AAACAAATTG CTGAATTAAA AGAAAAAAAC ATTACCGGTA TTGTTGTCGA TTTACGTAAC 
AATGGTGGTG GTGCATTAAC TGAAGCAACG GCATTATCTG GTTTATTTAT TACATCAGGT 
CCTGTAGTTC AAGTTCGTGA TAGTTATGGA CGTGTTAATG TCAATGCTGA TACTGATGGT 
GAAATTGCTT ATACTGGTCC GATGACTGTA TTAGTGAATC GTTATAGTGC CTCAGCTTCT 
GAAATTTTTG CTGCAGCAAT GCAAGATTAT GGCCGTGCTG TAATTTTAGG CGAAAATTCA 
TTTGGTAAAG GAACAGTACA ACAGCATCGT TCATTGAATC ATATTTATGA TTTATTTGAT 
AAGCCACTAG GTCATGTTCA ATACACAATT CAAAAATTCT ATCGAATCAA TGGTGGTAGT 
ACGCAAAATT TAGGTGTTGT TCCTGATATT GCATTTCCAA CCGCGATTGA TGCTAAAGAT 
ACTGGCGAAA GTGTTGAAGA TAATGCACTT CCTTGGGATA GCATTAAAGC AGCCGAGTAT 
AAGCAAACAA ATCAGATTGC GAACACGATT GCTCCATTGG CACAAAAGCA TGTCGAACGA 
ATCAAATCAG ATGAAGAGTT TGGTTTCATT CAAGAAGATA TTGCTCGCTA TAAAGCTGAA 
AAAGACATTA CTTCGATGTC ACTAAACAAG AAAGTGCGTG AGAAAGAAAG TGATGATGCT 
GATGTTCGTC GTTTAGATCG TGTAAATCAA AGACAAAAAC ATCTTGAAAA AGAAGCGTTT 
AAATCTATTG ATGACATACC AAAAGATTAT GAAGCACCAG ATGCTTATTT AGACGAAGCA 
GTGTCAATTA CCATTGATTT GGCAACAATG GAACGTTAA 

 

Protein sequence

MNCRFRVSLI AAGVMLAASA HALEAKVLEA KYSETDLPVL AAETQHATAS KRVTSRFTRS 
HYKHFSLNDD FSVAIYERYL DMLDYNRNVF IQADLTSFAP LSTKFDDQLK VGDTQAAFDI 
YNLSLKRRFE RYVYALSLLD KEFDYTVDES FELDRSDAAW PKDDAELNEL WRKRVKYDAL 
NLSMTGKDWP EIQKMLGKRY NNALKRLTQS HNEDAFQLYI NAFAREVDPH TSYLSPRNAE 
QFQSEMNLSL EGIGAVLQAT DDYTVIRSLV AGGPAQNSKQ LSEGDRIIGV AQEGEKSVDV 
IGWRLDDVVQ LIKGPKGTKV YLDILPEGKD SKSHVVTIVR DKIRLEEDRA VKSEVIEQDG 
KKIGVLEVPS FYVGLAEDTK KQIAELKEKN ITGIVVDLRN NGGGALTEAT ALSGLFITSG 
PVVQVRDSYG RVNVNADTDG EIAYTGPMTV LVNRYSASAS EIFAAAMQDY GRAVILGENS 
FGKGTVQQHR SLNHIYDLFD KPLGHVQYTI QKFYRINGGS TQNLGVVPDI AFPTAIDAKD 
TGESVEDNAL PWDSIKAAEY KQTNQIANTI APLAQKHVER IKSDEEFGFI QEDIARYKAE 
KDITSMSLNK KVREKESDDA DVRRLDRVNQ RQKHLEKEAF KSIDDIPKDY EAPDAYLDEA 
VSITIDLATM ER