| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1538 |
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| Symbol | yebU |
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| ID | 6987183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1638580 |
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| End bp | 1640001 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379872 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_002262972 |
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| Protein GI | 209695043 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.317347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCACGATA ATATTTTTCT ACCCGATGCT TTTTTAGCAC AAGTTCAAGA AACTATGCCT
TCTCACCTTT CTATGGACGA ATTTGTTGCC GCTTGTAAAC GCCCTTTACG TCGCAGCATT
CGTGTGAATA CTCTAAAAAA CAGTGTTGAA GAATTCAAAA AAAGAGCCGA AGAAAAACAA
TGGCAATTAG ACCCAGTGCC TTGGTGTGAT ACGGGATTTT GGATCACAAG ACAAGAAAGC
GATACCGTAA AATTAGGCAG TACCGCTGAG CACATGGCTG GTCTATTTTA CATTCAAGAA
GCCAGTTCAA TGATGCCCGT CACTGCATTA TTAAAGGACA ATGACAATAT TGAAATGGCA
TTAGACATGG CATCTGCTCC GGGATCAAAA ACAACCCAAC TTGCCGCTGG AATGAAAAAC
AAAGGCGCTT TAGTTGCGAA TGAATATTCG TCAAGTCGTG TAAAAATATT GTGTTCAAAC
GTCCAGCGTT GTGGTGTGAG TAACGTAGCT CTTACTCATT TTGATGGTCG TGTATTTGGT
GGTTGGTTAC CTGAAACATT TGATTCAATT CTACTGGATG CCCCTTGTTC TGGTGAAGGA
ACAATCCGTA AAGATCCTGA CGCTATGCAT AACTGGAGCC CAGAATCGGT TATTGAAATT
GGCGATACTC AACGTGATCT AATAAAAAGT GCGTTCCACG CTCTTAAGCC CGGTGGTGTT
ATGGTGTATT CAACTTGCAC CCTAAACCAT GAAGAAAACC AAAACATTTG TCATCATTTA
GTGACCGAAT TCGGTGACGC CGTCACGTTC GAGCCATTAG GTGATCTTTT TGAGAATGCA
GAAAAAGCAT TAACAAAAGA AGGCTTTCTA CATATCTACC CTCAAATCTT TGACAGTGAA
GGCTTCTTCG TTGCAAAGAT TCGTAAAAAC TCGGCAACGA TTGCGCCGGA AGTTAAAAAA
CGATTAGGTA AGTTCCCTTT TGCTTTAGCA AATCAAAAAG AAATAAAAGC AATTGAAGAT
GAACTACATA ACACGCTGCA ATTATCTATT CCTGAAACCA ATGAACTTTG GATCCGAGAT
AAAGAAGTAT GGGCGTTTCC AAAAAGAATG AGCTCATTAA TCGGTGAAAT GCGTTATCAC
CGTATTGGAT TCAAACTTGC AGAAACTCAC AAGAAAGGCT ATCGCTGGCA GCATGAAGCG
ATTATGGCTA TTGCAAAAGC AGATAATCCA ACAAGTTCTG AATTAACCAT AGAACAAGCT
CGTGAATGGT ATATGGGTCG TGATGTTCGT CCTGATAATG TGGGTAAAGG CGAAACCATT
GTCACCTTTA ACGGTGCCGT GATTGGATTA GGTAAATGGG TTGGTAACCG CATAAAGAAT
GGGCTTCCTC GTGAACTGGT TAGAGACGGT AACTTATTTT AA
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| Protein sequence | MHDNIFLPDA FLAQVQETMP SHLSMDEFVA ACKRPLRRSI RVNTLKNSVE EFKKRAEEKQ
WQLDPVPWCD TGFWITRQES DTVKLGSTAE HMAGLFYIQE ASSMMPVTAL LKDNDNIEMA
LDMASAPGSK TTQLAAGMKN KGALVANEYS SSRVKILCSN VQRCGVSNVA LTHFDGRVFG
GWLPETFDSI LLDAPCSGEG TIRKDPDAMH NWSPESVIEI GDTQRDLIKS AFHALKPGGV
MVYSTCTLNH EENQNICHHL VTEFGDAVTF EPLGDLFENA EKALTKEGFL HIYPQIFDSE
GFFVAKIRKN SATIAPEVKK RLGKFPFALA NQKEIKAIED ELHNTLQLSI PETNELWIRD
KEVWAFPKRM SSLIGEMRYH RIGFKLAETH KKGYRWQHEA IMAIAKADNP TSSELTIEQA
REWYMGRDVR PDNVGKGETI VTFNGAVIGL GKWVGNRIKN GLPRELVRDG NLF
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