| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1389 |
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| Symbol | rsuA |
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| ID | 6987050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1505861 |
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| End bp | 1506550 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643379744 |
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| Product | ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_002262843 |
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| Protein GI | 209694915 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.31939 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGCCTTG ATAAATTTGT TTGTAAAAGT ACGACGTTAA CAAAAAACGA AGCGCTTGAA
TGCATTGCTG AGGGAAGAGT AAAAGTGAAT GCTAAGATTG TTACCGTTGA ATCGACTCAA
GTGCATGAGA ACAACCATGT GACACTCAAT GGTGATTTAT TGACTGCTCG TCCTTTTCGC
TACTTACTCA TGAATAAACC TGCTAATACG ATTTGTTCAA ACATCGATGA AGCCTATCCC
TCCTTATTCA ACTATATTAA AGAAGGTAAT AATTCGGAAT TGCACATTGC TGGGCGTTTA
GATTCAGATA CCACTGGCCT TGTGCTTATT ACCGATGACG GTCGATGGTC ATACAATATT
ATTACGCCAT CAAAGAAATG CGAGAAAGTA TATCGAGTTG GTTTACGTAA TATAATTACC
AGTGAGGCAA TAATCAAGAT CGAGTTAGGT GTGCAACTGC AAGGGGAAGT AGAGTTAACA
AGGCCTGCTA AATTGAAGAT TATTACAGAG AGAGAAGTAT TACTGACCAT TATTGAAGGT
AAGTTCCATC AGGTAAAACG TATGTTTTCT GCTGTTGGAA ATAAAGTGAT TTTATTGCAT
AGAGAGCAGT TCGGAGAGAT CAGTTTGGAT GTAAATGAAG GTGAATGGCG TTATTTAACT
GATTATGAAG TTAACTCATT TGAGTATTAA
|
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| Protein sequence | MRLDKFVCKS TTLTKNEALE CIAEGRVKVN AKIVTVESTQ VHENNHVTLN GDLLTARPFR
YLLMNKPANT ICSNIDEAYP SLFNYIKEGN NSELHIAGRL DSDTTGLVLI TDDGRWSYNI
ITPSKKCEKV YRVGLRNIIT SEAIIKIELG VQLQGEVELT RPAKLKIITE REVLLTIIEG
KFHQVKRMFS AVGNKVILLH REQFGEISLD VNEGEWRYLT DYEVNSFEY
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