| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1357 |
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| Symbol | hpc |
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| ID | 6987027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1475219 |
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| End bp | 1475737 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643379715 |
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| Product | secreted protein Hcp-2 (haemolysin co-regulated protein) |
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| Protein accession | YP_002262814 |
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| Protein GI | 209694886 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAACTC CAGCATATAT GTCAATTAAA GGCGAAACTC AAGGCGATAT CACTAAAGAT
GCGTACTCAG CAGATTCAGT CGGTAATACA TGGCAGGAAG CTCATATTGA TGAGTTCCTA
GTTCAAGAGC TTGATCATGT ATTAACGGTT CCACGTGATC CACAAAGTGG TCAACCTACT
GGTCAACGTG TTCACCGTCC AGTTATCGTA ACTAAGCAAC AAGACCGCTG TTCTCCATTA
TTATTCAACT CTTTAGTCTC TGGTGAGAAA CTGCCTGAAT GTAGCATCAA CTTCTACCGT
ACCTCTATTT CTGGTAAGCA AGAGCATTAC TACACAATCA AACTGATTGA TGCACTATTG
GTTGATATGC AAACGCGTAT GGCTCATTGC CAAGATGCTG CTACTTCTGA TCGTGTAACG
GAAGAAGTGC TTAAGTTCAC TTACCGTGCC ATTGAAGTAA CTCACGAAAC GTGTGGTACG
GCAGGTGATG ATGATTGGCG TAAGCCACGC GAAGCGTAA
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| Protein sequence | MPTPAYMSIK GETQGDITKD AYSADSVGNT WQEAHIDEFL VQELDHVLTV PRDPQSGQPT
GQRVHRPVIV TKQQDRCSPL LFNSLVSGEK LPECSINFYR TSISGKQEHY YTIKLIDALL
VDMQTRMAHC QDAATSDRVT EEVLKFTYRA IEVTHETCGT AGDDDWRKPR EA
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