| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1353 |
|---|
| Symbol | |
|---|
| ID | 6987024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1469371 |
|---|
| End bp | 1472448 |
|---|
| Gene Length | 3078 bp |
|---|
| Protein Length | 1025 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379711 |
|---|
| Product | putative multi-drug efflux protein |
|---|
| Protein accession | YP_002262810 |
|---|
| Protein GI | 209694882 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.434424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG AAAAGGGAAT TGCAGCGTAC TTTATTCAAA ATAAAGTGAT CAGCTGGATG
TTGACTTTGA TTTTCATTAT TGGGGGAACC TCTGCTTTCT TTGGCTTAGG GCGATTAGAA
GATCCTGCGT TTACCATCAA AGATGCAATG GTTGTGACCA ACTATCCGGG TGCCACACCA
GAGCAAGTTG AAGAGGAAGT GACGTATCCG CTTGAAAAAG CGATTCAACA ACTTACCTAT
GTTGATGAAG TGAATTCATT ATCGAGTCGT GGTTTATCTC AAATTACGGT AACCATGAAG
AATAATTATG GCCCTGATGA TTTACCACAA ATTTGGGATG AACTGCGCCG AAAGGTAAAT
GACTTAAAAC GTCAGTTACC GCCGGGAGTC GGAGAACCAT CCGTTATTGA TGATTTTGGT
GATGTATACG GTGTACTTCT TGCCGTTACA GGACAAGGGT ATTCGTATAA AGAACTTCTT
GATTATGTTG ATTATTTACG TCGTGAATTA GAACTTGTTG ATGGGGTAAG TAAAGTCTCA
GTCTCTGGTG TTCAACAAGA GCAAGTCTTT ATTGAAGCGT CACTAAAACG CATGACAAGC
TTAGGTATTT CACCTCAAAC ACTCTACAGT TTACTTTCTG AGCAAAATAC CGTTTCAAGT
GCGGGTGCCG TAAAAATTGG TTCTGAATAC ATACAGATCC ACCCAACGGG CGAGTTTCAA
GATGTGTCGC AACTTGGTGA TTTGATTATT ACTGAAGGTG GAGCGCAAGG TCTTATTTAT
TTAAAAGATA TTGCGACCGT AAAGCGAGGT TATGTTGAAG TACCAAGTAA TTTAATTAAC
TTCAATGGTA ATTTTGCACT CAATATGGGG ATCTCATTTA GTGCGGGGGT AAACGTTGTT
GAAATCGGTA AATTGGTTGA TCAACGAATG TTGGAGTTAA AAAACCAACA GCCCATTGGT
ATTGATATTT CTGAAATATA CAGTCAGCCA AAAGAAGTTG ATAAATCGGT GAGTGGTTTT
GTGGTGAGTT TAGCGCAAGC CGTTGCCATC GTGATTATCG TTTTACTTTT CTTTATGGGC
GTGCGTTCAG GCTTATTGAT CGGATTAATT CTGTTAATCA CCGTCTGCGG TACGTTTGTT
TTCATGAAGT ACTTGGCCAT CGATTTACAA CGAATCTCAT TAGGTGCGCT CGTTATTGCG
CTAGGAATGT TGGTCGATAA TGCCATTGTG GTGGTTGAAG GGATCCTCAT CGGTATGCAA
AAAGGCCGAA CGAGGATGCA AGCGGCCACC GATATTGTTA CGCAAACCAA GTGGCCCTTA
TTGGGCGCTA CGGTTATTGC CGTGACAGCC TTTGCTCCAA TTGGTTTATC TGATGATGCA
ACGGGGGAAT ACTGTGGAAC CTTGTTTACG GTTCTATTGA TTTCATTAAT GCTGAGTTGG
TTTACTGCCA TTTCTCTTAC GCCATTCTTT GCGTCTTTAT TCTTTAAAGA AACCGTTCAG
GTTGAAGGGG AAAATAACGA AGATAAAGAT CCGTACAATG GCATGATCTT TGTTATTTAT
AAGCGTTTTC TTGAGTTCTG TATGCGCTAC TCAATCGCAA CGATGCTGAT CCTTGTTGTT
GCACTTGGTG GCAGCATGTA TGGCTTTACC AAGGTTAAAC AATCGTTCTT CCCATCATCA
ACAACGCCAA TTTTCTTGGT GGATGTATGG ATGCCAGAAG GAACGGACAT TCGCTCAACC
AACAAGACGC TAAAAGAATT AGAAGATTGG ATCTTAGAGC AGAAACACAT TGATCATGTC
ACAACCACGG CGGGTAAAGG TTTACAGCGA TTCATGTTGA CCTATGCACC AGAAAAGAGC
TATGCCGCGT ATGGCGAGAT AATGACTCGT GTTGATGATT ACAACGCATT GCTGGCATTA
ATGGCTAAAT TCCGTCAGCA TATTGAAACT AATTATCCGC AGATCCAATA CAAACTGAAG
CAGATTGAAT TAGGACCCGG TGGTGGAGCT AAAGTTGAAG CTCGCATTGT GGGTGCCGAT
CCAACCGTTC TTCGCAGTTT AGCCGCGCAA GTTATTGAAG TTATGCACAA TGACCCATCA
GCGACGAACA TTCGTCATGA TTGGCGTGAG CGAACTAAGG TATTAGAGCC TCAGTTTAAT
GAGAGTCAGG CTCGTCGTTA CGGCATCTCT AAAACTGATG TGAACGAACT GCTTGAGATG
GCCTTTGCGG GTAAAGCGAT TGGTGTGTAC CGTGATGGTA CAACGTTAAT GCCTATTGTG
ACGCGTTTAC CTGAAAATGA ACGTGTTGAT ATCAGCACGA TTGAAGGAAT GAAGATCTGG
AGCCCGGCAT TATCATTGTA CATCCCATTA CAGCAAGTGG TATTGGGCTA CGATGTCATT
TGGGAAGATC CACTGATAGT GCGTAAGAAC CGTAAACGTA TGTTAACCAT AATGGCTGAT
CCAGATATTC TAGGTGAAGA AACGGCGGCG ACATTGCAAA AACGTTTGCA ACCACAAATA
GAAGCGATCG ATTTCCCTAC AGGTTACAGC TTAGAATGGG GGGGTGAATA TGAATCATCA
CGTGATGCAC AAGCGTCTCT GTTCCAAACC ATGCCAATGG GGTATTTGTT CATGTTCCTA
GTGACGGTGT TCCTCTTTAA TAGTGTGAAA GAGTCCGTCA TTGTGTGGTT AACCGTTCCA
TTAGCTCTCA TCGGTGTAAC TACTGGCTTA TTAGCACTTA ATACCCCCTT TGGCTTCATG
GCGTTATTAG GTTTCTTGAG CTTAAGTGGT ATGTTACTGA AAAATGGCAT CGTCTTACTC
GACCAAATAG AGATAGAAAT ACATTCAGGT AAAGAACCGT ATCATGCGGT GGTTGATGCG
GCGTTAAGTC GTGTTCGTCC TGTATGTATG GCCGCAATCA CAACCATTCT AGGTATGATC
CCGTTATTGC CGGATACCTT CTTCAAACCA ATGGCCGTGA CCATTATGTT TGGTTTAGGG
TTTGCAACCG TACTGACGTT GATTGTGGTT CCGGTGCTGT ATCGTATGTT CCATAAAATT
AAGGTTGTAG AGTATTAA
|
|---|
| Protein sequence | MSQEKGIAAY FIQNKVISWM LTLIFIIGGT SAFFGLGRLE DPAFTIKDAM VVTNYPGATP
EQVEEEVTYP LEKAIQQLTY VDEVNSLSSR GLSQITVTMK NNYGPDDLPQ IWDELRRKVN
DLKRQLPPGV GEPSVIDDFG DVYGVLLAVT GQGYSYKELL DYVDYLRREL ELVDGVSKVS
VSGVQQEQVF IEASLKRMTS LGISPQTLYS LLSEQNTVSS AGAVKIGSEY IQIHPTGEFQ
DVSQLGDLII TEGGAQGLIY LKDIATVKRG YVEVPSNLIN FNGNFALNMG ISFSAGVNVV
EIGKLVDQRM LELKNQQPIG IDISEIYSQP KEVDKSVSGF VVSLAQAVAI VIIVLLFFMG
VRSGLLIGLI LLITVCGTFV FMKYLAIDLQ RISLGALVIA LGMLVDNAIV VVEGILIGMQ
KGRTRMQAAT DIVTQTKWPL LGATVIAVTA FAPIGLSDDA TGEYCGTLFT VLLISLMLSW
FTAISLTPFF ASLFFKETVQ VEGENNEDKD PYNGMIFVIY KRFLEFCMRY SIATMLILVV
ALGGSMYGFT KVKQSFFPSS TTPIFLVDVW MPEGTDIRST NKTLKELEDW ILEQKHIDHV
TTTAGKGLQR FMLTYAPEKS YAAYGEIMTR VDDYNALLAL MAKFRQHIET NYPQIQYKLK
QIELGPGGGA KVEARIVGAD PTVLRSLAAQ VIEVMHNDPS ATNIRHDWRE RTKVLEPQFN
ESQARRYGIS KTDVNELLEM AFAGKAIGVY RDGTTLMPIV TRLPENERVD ISTIEGMKIW
SPALSLYIPL QQVVLGYDVI WEDPLIVRKN RKRMLTIMAD PDILGEETAA TLQKRLQPQI
EAIDFPTGYS LEWGGEYESS RDAQASLFQT MPMGYLFMFL VTVFLFNSVK ESVIVWLTVP
LALIGVTTGL LALNTPFGFM ALLGFLSLSG MLLKNGIVLL DQIEIEIHSG KEPYHAVVDA
ALSRVRPVCM AAITTILGMI PLLPDTFFKP MAVTIMFGLG FATVLTLIVV PVLYRMFHKI
KVVEY
|
|---|
| |