Gene VSAL_I1333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1333 
SymbolsbcC 
ID6989223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp1445730 
End bp1449410 
Gene Length3681 bp 
Protein Length1226 aa 
Translation table11 
GC content40% 
IMG OID643379693 
Productnuclease sbcCD subunit C 
Protein accessionYP_002262792 
Protein GI209694864 
COG category[D] Cell cycle control, cell division, chromosome partitioning
[L] Replication, recombination and repair 
COG ID[COG0419] ATPase involved in DNA repair
[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR00618] exonuclease SbcC 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAATTT TAAGCCTAAG TTTTTCAAAT TTAAACTCAT TAAAAGGTGA GTGGAAAATT 
GATTTCTCAG CGTCGCCCTT TGCTGAAAAT GGATTGTTTG CGATTACTGG CCCAACAGGT
GCGGGTAAAA CGACGATTTT AGATGCGATC TGTTTGGCGC TTTATCATAA GACCCCTCGA
CTTGGTGGTA TTTCAACCTC AAGCAATGAA ATCATGACGC GTGGTACGGC GGAATGTTCA
GCTGAAGTGG AATTTGAAGT GAAAGGTAAA GCGTATCGTG CGTTTTGGAG CCAACGTCGT
TCTCGCGGCA AAGTGGATGG AAACTTACAA GCAGCGACGG TTGAGCTTGC AGAAGTCGAT
TCTGAAAAAG TATTAGCAAC GCAAGTCAAA AAGAAAGATG AGCTAATCAA CTCGATTACG
GGGTTAGATT TCTCTCGCTT TACAAAATCG ATGATGCTTT CTCAAGGTCA GTTTGCGGCG
TTTTTAAATG CTGATGCCAA TGATCGTGCC GGTTTATTAG AAGAGTTAAC GGGCACAGAG
ATCTACGGTC AGATCTCCGA AAAAGTGCAT GAGCATTACA GTGCATCTAA GCAGAAGTTA
GCAGAGCTTA AAGCCAAGGC TGAAGGTGTT GAGCTGCTTT CTGAAGAAGA TAAGCAAGCA
TTAATCGACG AACAAACTGA ATTACAAACC AATCAAAAAC AACAGCAAGC TCAAGTTGCA
GAGTGGCAAA CTCATTTAGA GTGGTGGATT TCTGATACTA AAAATCAACA ACAATGGCAA
CAAGCGAGCG AAAATAATCA ACTCGCGTTG GATAAGCAAA AATCAGCAAG TATTCAACTG
CACCGTTTAG CGCAAAGCGA GCCCGCGGAA AAATTGCGTA CGCCATATCA ACTATGGAAA
GAAGCACAAA CTCGCTTCGA TAGTTTAGTA AAAGAACTAA CTCTGACCGA GCAATTACAT
CAAAAAACGG CAGCTGAGAA AGTGGATCTT GGATCTACGG TTACGCAATT AAAACAACGG
TTTGACAGAA TTAAAGTTGA GAGTAAATCG TTAGAAGTAT TGATTAATGA TTCAGTGCAA
CCGCTAGATA CTGCGATTGA ACAGTTAACT CAACAATCGC AAGAAAAGCA GCAACAGCTC
ACGCAAGTGA ATACTCGTCT TCAAGATGGC AGTAATAAAC AACAACGATT AGAGGCGTCA
TTAACAGAGT TAACGTCAAA ATTAGCAGTA CTAAATAGCT ATGTGGAAAC GCATCAATCA
GATTTGAATT TAGAGCGTTA TTTAGGTCAA TGGAAGACGC AAGTTAGCTA TATTTTACAA
CAAGATAAAG AAGTATCATC TTTAGTTGAT AAAATAGAAA AAGCCAATAA AATAGTCGCA
ACGTTACTTG AAAATGTCAG CCAAAAAGAA GCGGAATTAA CGCAAGTTCA AAGCACATTA
AATAATGAAA CAGAAGTAAC GAAAAACGCT GAACTCGTAT TTAAACAGCA ACAAGAAAAA
GGCACTGAAA CGGAGCTAAC AGAGCAAATA AATGCTCTTA ATACTCGTCA TCATTACCGT
GTAGAGTTGA ATCATACTAA TAATGAGTTT TTACGTGCTG AAAAAGAGCA ACAGACGTTA
AGCGAAGCTC AAAAAGCGCA AAGTGAAACG ATTCTAAAAT TAGAAGCTCA GCGTGCTGAT
CTTGTTATTG CCTGTAAGCA GCAAGATCAA CAAATCTTAG ATTTAACGAC GTTAATTGAG
CAAGAAGATG ATCTGGTTAA GTATCGTGCT CTATTAGAAA AAGATCATGA TTGTCCATTG
TGTGGTTCAA CGCATCATCC GTTATTAGAA AAAGCGCAAA CATTAGATAT TAATGTAACG
ATACAACGTA AAAAAGCGGC AGAACAAAAG CGAGTTGAGA TTGTAGAGCA AGGTCAATTG
GTGCGTGAGA AGCTAGATTC ATTAAAAGTA AAACAAGATC ACACCCAAAC TCAATTAACT
CAATGGCAGC AAACGGCAAA AATGACCAAG CAACAATGGT CATCATTAAT GGAAGTAACG
CAACTCACTT TGGCGTTGGG AAATACCAAT GGTATTACTC AGTTTATTAC TGAATGTGAA
GCGTCGTTAC TCACGTTAAG TGAGCAGATA AAACAGTTAC GCCAAGCCGA TGAAAAGTGC
CGAGTTCAAC AAACTCAATT ACAACAAGTT CAGCATCGTC TTGATACGTT AACTAAAGAT
CTTAATTACG ATCGTCAATC ACACCAAGTC GCAACTCAGC AACTGCAAGA TGACAATCAA
AAATTAGTAC AGTTACAACA ACATCAAACA GAATTGAATC AGCAGTTAAT CACAGAGATT
GAGCAAACAG GGTTTACTGC CCCAGAGTTT ACTCAAATTC AATCGTGGTT TGTGCAAAAA
GAGCAAGATT TACAGCAAAT TCAGCAGCAA GTGAAAAATC GTCAAGCTTT GCTTCAGCAG
CAGCAACAAG TACAAAGTGA CCAGGTTCAT CTAGCAGAAC AGTTAGAAGA GCTAAACTCC
CAGCAGCAAG TGTCTCAAAC TGAAGTGCAA AGATTGGCGA GTGAGTTGGA ACAACACCAG
CAAAAGCGAG TTGAGTTATT TGGTACTCAA GAGATTAAAA CCGCACGATC TGTAATGACA
GATAAATTGT CGGTTTCTGA GAAAACGTAT GATGCAGAGC AGCAGAAGTT GCACGTTTTG
GTGCAAGCGC TTGCGGCTTT AGATGGCAAA CTAAATAGCC TTAAAGAGAA TCATGTAAGC
AGTGAAAAGC TATCGATAGA GCGTTCTGAT TTATGGAAAG AAGCTTTAGT GCAAAGCCCG
TTTGAAACGC TTGAGTTATT CCAAGCGGCG TTGATTTCAG AAGAAGATCG TCAACAGCTA
CTCAGCTTAA AAACTGAAAT ACAACAAGCG ATTGAGCGAA CTGGCGCTTT GCTAGAGAGT
GCACAGCAAG TCAAAGAACA ACATTACCAA GAGCCCAAAG CCGTTGAGTG GCAATTAATG
ACAAAAGAAA CCGTTGAGAC TGAATTAGCC CAAGTGAAAT TTCAATCTGA AACATTAGTG
AAGCGCGAAG GTGAAATCGC CCAAGCGCTA CGCTCAGACG GTGAACGTAA ACTGAATCAA
AAAAGCTTGT TTGATGAGAT TGAATCGTAT CAATTTGAGT ACGATGATAT TCAATATTTA
CACTCATTAA TTGGTTCCCA GAAAGGGGAT AAATTCCGTA AGTTCGCGCA AGGGTTAACA
CTAGAAAATT TAGTGTATTT GGCGAATAAG CAACTGACTC GATTGCACGG ACGTTATGAA
TTAAAACGCA AAGCCAGTGA TGGTCTTGAA TTACAAGTAC TCGATACATG GCAAGGGGAT
GTGGTTCGTG ATACCAAAAC CTTGTCGGGT GGTGAGAGTT TCCTTGTAAG TTTGGCGTTA
GCACTTGCAC TTTCTGATTT AGTGAGCCAT AAAACAAGTA TCGATTCACT GTTCTTAGAT
GAAGGTTTTG GTACTCTGGA CAGTGAAACG TTAGACATGG CGCTTGATGC GTTAGATAAC
TTAAACGCCT CAGGAAAAAT GATAGGGGTG ATCAGTCATA TTGAAGCGAT GAAAGAGCGT
ATACCCGTTC AAATAAAAGT CACCAAACGC AGTGGATTAG GCGTGAGTGA ACTAGAAAAT
CAGTATAAAA AAGTCAGTTA A
 
Protein sequence
MRILSLSFSN LNSLKGEWKI DFSASPFAEN GLFAITGPTG AGKTTILDAI CLALYHKTPR 
LGGISTSSNE IMTRGTAECS AEVEFEVKGK AYRAFWSQRR SRGKVDGNLQ AATVELAEVD
SEKVLATQVK KKDELINSIT GLDFSRFTKS MMLSQGQFAA FLNADANDRA GLLEELTGTE
IYGQISEKVH EHYSASKQKL AELKAKAEGV ELLSEEDKQA LIDEQTELQT NQKQQQAQVA
EWQTHLEWWI SDTKNQQQWQ QASENNQLAL DKQKSASIQL HRLAQSEPAE KLRTPYQLWK
EAQTRFDSLV KELTLTEQLH QKTAAEKVDL GSTVTQLKQR FDRIKVESKS LEVLINDSVQ
PLDTAIEQLT QQSQEKQQQL TQVNTRLQDG SNKQQRLEAS LTELTSKLAV LNSYVETHQS
DLNLERYLGQ WKTQVSYILQ QDKEVSSLVD KIEKANKIVA TLLENVSQKE AELTQVQSTL
NNETEVTKNA ELVFKQQQEK GTETELTEQI NALNTRHHYR VELNHTNNEF LRAEKEQQTL
SEAQKAQSET ILKLEAQRAD LVIACKQQDQ QILDLTTLIE QEDDLVKYRA LLEKDHDCPL
CGSTHHPLLE KAQTLDINVT IQRKKAAEQK RVEIVEQGQL VREKLDSLKV KQDHTQTQLT
QWQQTAKMTK QQWSSLMEVT QLTLALGNTN GITQFITECE ASLLTLSEQI KQLRQADEKC
RVQQTQLQQV QHRLDTLTKD LNYDRQSHQV ATQQLQDDNQ KLVQLQQHQT ELNQQLITEI
EQTGFTAPEF TQIQSWFVQK EQDLQQIQQQ VKNRQALLQQ QQQVQSDQVH LAEQLEELNS
QQQVSQTEVQ RLASELEQHQ QKRVELFGTQ EIKTARSVMT DKLSVSEKTY DAEQQKLHVL
VQALAALDGK LNSLKENHVS SEKLSIERSD LWKEALVQSP FETLELFQAA LISEEDRQQL
LSLKTEIQQA IERTGALLES AQQVKEQHYQ EPKAVEWQLM TKETVETELA QVKFQSETLV
KREGEIAQAL RSDGERKLNQ KSLFDEIESY QFEYDDIQYL HSLIGSQKGD KFRKFAQGLT
LENLVYLANK QLTRLHGRYE LKRKASDGLE LQVLDTWQGD VVRDTKTLSG GESFLVSLAL
ALALSDLVSH KTSIDSLFLD EGFGTLDSET LDMALDALDN LNASGKMIGV ISHIEAMKER
IPVQIKVTKR SGLGVSELEN QYKKVS