| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1232 |
|---|
| Symbol | |
|---|
| ID | 6986918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1342496 |
|---|
| End bp | 1343359 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 643379605 |
|---|
| Product | HTH-type transcription regulator, LysR family |
|---|
| Protein accession | YP_002262704 |
|---|
| Protein GI | 209694776 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.35441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATC TCCAGCAACT TGAAACTCTG ATTCTTTGTG TCGAGTGTGG TTCATTCTCT
GCCGCTGCTC GAAAATTGGG AAAAGCGCAA TCAGCCGTTA GTACTGCTAT TGCTAATTTA
GAGATAGATA CGGGAGTGGA GATATTTGAT CGCTCGACAC GCCTTCCTAC ATTGACACCC
CATGGCAAGC GCTTGTATAC CCAATCTATC CATTTATTAT CTCAGGCAAA AGACATTGAA
ACCATGCTTC ACTCTTTTAG CCTCGGAGTT GAAGATACAT TAACCATCGT AATTAATGAG
TTACTATTAA CACCTACATT TTTTAACGTA ATCAATGAGT TTTATCTGTA TTTCCCTCAT
ACAGAGTTGC ATATTAATAT CGCAGAAAAT AAAGATATCT CTGAATTAGT CGCCCAAGGA
AAAGCCTCTA TAGGGTTTAT GCTCTGTGAC GATGCTCTTC CTCAAAAAGT AGAACTTGGC
TTGGTGGGTT ATTTACCTAT TTCGATGGTA GCCAATAATA ATCATCCCTT GCATTCACAA
GATTCTATTC ATCTCAATGA ATTAAAGCGA TACCATCAAA TACTACTGAC TAATATGCAT
AGCCCTTGGA ATGTTCATTT TTCATCTTCC GTGACTAAAA CGAACAATGC TAGTGCTCTG
CAATCGTTAT TAACGGTTAA TGATTCTTGG GGATTTGTTC CTGACCATCT AACTAAAAAA
AATAACGTGT TAAAAATATT AGATTTAGAC TCAGAAGAAA AAAATTGGTT GTTACATATA
GACCGTGTTG TTATAAAAAA CAATAACATT GGTCAAGCCT ACTCTTGGTT ATATCAACAT
TCCGTAGACA TGTTTGAACA ATAA
|
|---|
| Protein sequence | MFNLQQLETL ILCVECGSFS AAARKLGKAQ SAVSTAIANL EIDTGVEIFD RSTRLPTLTP
HGKRLYTQSI HLLSQAKDIE TMLHSFSLGV EDTLTIVINE LLLTPTFFNV INEFYLYFPH
TELHINIAEN KDISELVAQG KASIGFMLCD DALPQKVELG LVGYLPISMV ANNNHPLHSQ
DSIHLNELKR YHQILLTNMH SPWNVHFSSS VTKTNNASAL QSLLTVNDSW GFVPDHLTKK
NNVLKILDLD SEEKNWLLHI DRVVIKNNNI GQAYSWLYQH SVDMFEQ
|
|---|
| |