| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1229 |
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| Symbol | |
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| ID | 6986915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1338909 |
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| End bp | 1339841 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379602 |
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| Product | putative immunogenic protein precursor |
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| Protein accession | YP_002262701 |
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| Protein GI | 209694773 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.144519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGTGT TTAAACGTAA CTTACTATTG GCTTTATTAT TTATATTGCC ATCAGCAGTG
AACGCTGAGA ACTATTCAAT TGGTACGGGT GGGCAGAGTG GGATCTATTA TCCGTTTGGT
GGTGCGTTAG CAAAAGTGTG GTCAGAACAT GTACCCGATG TGAATGCGAA AGCTGAAGTG
ACAGCCGCTT CAGTAGAGAA CACAATCAAA GTGGTACGTG GCGATATGAT CGCAGGTATC
GCAATGGGGA ATGTCGTGCT TGATGCCTAC AATGGCAAAG GTAAATTTCC GAAAAAAATG
CCAGTAAACA CCCTTTTTGC ACTGTACCCA AACCTAGTGC ATACACTAAC TCTTGAAAAA
TCAGGCATTA CGTCATTATC ACAATTAAAA GGCAAGCGAG TGTCTTTAGG GGCTCCTGCC
AGTGGTACGG CTGTGACGTC TGCTGCTTTG CTTGAATCTT TAGGTATTGA TGTGAAAAAA
GACATTGATG CCGTGTATTT AAATTATTCT GAAACGACTA ATGCGCTTGC GAATGGTCAA
ATTGATGCTG GCTTTATTGT GGGTGGTCAA GGCGTAGGGG CGGTAACTCA AATCGCGTTA
ACGCATAAAA TTAAAGTGCT TTCAATTACA CCAGAAGAAA GTGCAATGTT CATGAAAAAA
TACCCTGCAT ACAGCACGTA CGATATGCCT GCTGGTGTAT ACAACAATGT AGGTGAAGTA
TCGACATTAA GTGTATGGAA CGTATTGGTT GTAAACGCAA AAATGAGTGA TGACATGGCA
TACAACTTAA CCAAAGCCGC TTTTGAAAAT ATCGGCGATG TTCGTAAAGT GGTTAAAATG
GCAGAGATGA CAACACCTGA AAATGCAGAT CGCTTACAAG GTGTCCCTCT TCATCCTGGT
GCTCAAAAAT ATCTTGATTC AATCATAAAA TAA
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| Protein sequence | MIVFKRNLLL ALLFILPSAV NAENYSIGTG GQSGIYYPFG GALAKVWSEH VPDVNAKAEV
TAASVENTIK VVRGDMIAGI AMGNVVLDAY NGKGKFPKKM PVNTLFALYP NLVHTLTLEK
SGITSLSQLK GKRVSLGAPA SGTAVTSAAL LESLGIDVKK DIDAVYLNYS ETTNALANGQ
IDAGFIVGGQ GVGAVTQIAL THKIKVLSIT PEESAMFMKK YPAYSTYDMP AGVYNNVGEV
STLSVWNVLV VNAKMSDDMA YNLTKAAFEN IGDVRKVVKM AEMTTPENAD RLQGVPLHPG
AQKYLDSIIK
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