| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1204 |
|---|
| Symbol | |
|---|
| ID | 6986892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1312374 |
|---|
| End bp | 1314290 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643379579 |
|---|
| Product | putative phospholipase |
|---|
| Protein accession | YP_002262678 |
|---|
| Protein GI | 209694750 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2267] Lysophospholipase
[COG4667] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAAC ATTATTCGAT CAGTAAACAA AATTATGATG TGTTTCGTGT ACCTAAAACA
AAAGTCGATA AGATTGCTTT AGTGACAGAA GGTGGTGGTC AAAGGGGGAT TTTCACCGCA
GGAGTGCTGG ATACGTTTTT AGAAGCCAAA TTCAATCCAT TTGCTTTATT GATTGGAACA
TCGGCAGGTT CGTTGAATTT GGCCTCTTAC ATCTGTGGGC ATAAAGGACA CGCTTACCGG
ATCATTAATC AAATCACCCG CAGTCCTGAT TTTTTTAAAT TGTCTCGTTT TTTACTCTCT
GGCGAAGGGA TGGATCTGGA TTGGTTAATC GATAAAACCG AAGCCGATAT TCCGTTAAAC
TGGACAGTAG GAGAAATGCA CTTACATACC AAACAAGTAC TTGCTGTTGC TGCTCATGCC
ACTAATTTTG AAACTAAGTA CTTTGACTTA TCGACCACAA ATTGGAAAGA TATTTTACGT
GCCTCTTGCG CGATTCCTGC GTTGCATAAA CAACCGGTGA TCATGGATAA AATGGAATGG
GTTGACGGAG GATTAACGAC GCCGATTCCT GTACAAGAAG CCTATGATAG AGGTTATCGT
CACATTGTTG TTATCCGTAC TGTTCCGGTT GAATTTAAAG AAAACCACGA CTGGATGATG
AAAGTCGCCA AGATGACTAA AAATGCCAAA TTAAATCAAA TGGCCGTGAT GTTGATGAAT
CACGAAGAAA GCTACCGTAA AACGCAGGTA TTTTTAGCTA ATCCGCCGGA TGATGTCACT
ATTTATGAGA TTTCACCGAA TAAGAACCTT GAATCTAAAT TACTGGGAAG CACTAAAGAG
CAATTAGATA ACGATTATCA ACACGGTAAA GATGTGGGGA AATTATTTCT AGAGGTGATT
GCGCCTAAAT TGAATTTAGA GCAAGCACCG CAACCGCATA TTCTTGTAAA AACACACGAA
GATCGATTGA AAGAAGAGAA CAGAAAACAA GATTATGAAG ATCCGATTGA TAAGATTTGG
AGCAACAAAA CGCACGGTGA AGTGCTCGGT GTTGATCGAA TTGCCTTGAA GTGGATTAAC
ATTAACGTTG GTGAAAAGAA ACAGACGTTA GTGATCGTTA ATGGTCGTAA TGAAAGTTAT
TGGAAATACA AAGAAGCCAT TCTTGAGTTA AGTCAGTATT TTAATATTTA TACGTATGAT
CACCGTGGAC AAGGTGAGTC AGGACGGATA ACGCAAGATC ACGAATTAGG CCATGTGGAT
GACTTTCATG ATTATGTGAT GGATCTGTAT ATCTTTATGG AAAAGGTTGT CAGACCAAAT
TTAGAAGGAG AGTGCTTTAT GCTTTCTCAT TCGATGGGGG GAGCGGTGAC CGCCCAATAC
CTTTCAAAAT TTGATCATCC CGTAACGGCA TCAGCGGCAA CGTCACCAAT GTTTGGTGTG
TATATACCAG GCAAAGCGTA TGGACTAAAA ACTCAAACAC TAAACTTACT TGATGTGTTG
GCGAGTAAGC CTAACTATGC ATTAGGGCAA AGTCATTTTA AGAAAGTTGA GTATGACGAT
AACGTATTAA CTCACAGTAA AATAAGATAT CAAATGTTTG TTGAGCTGTT TGAAAATATG
CCGAATTTAC GGTTAGGAGG CCCAAGTACT CATTGGATCA CTGAATCTAT AAAAGCAGGA
AAAAAATGCA TCGCTGAAGC TCATAAAATA AAAATTCCAA TGCTGATTTT ACAAGCAGGA
GACGATCTTG TTGTGAGTAA TGTGGCTCAG CGAAGTTTTC ATGAGAACAG TCATCTTTGT
CATTTAGAAA CAATCCCAGA TTCGTATCAT GATATGTTGA TAGAAGACGA TAAACATCGA
GATATTGTAT TAAGAAAATT GATTAATTTC TTTAGTAGTG ATTATAAGTT TTATTAA
|
|---|
| Protein sequence | MGEHYSISKQ NYDVFRVPKT KVDKIALVTE GGGQRGIFTA GVLDTFLEAK FNPFALLIGT
SAGSLNLASY ICGHKGHAYR IINQITRSPD FFKLSRFLLS GEGMDLDWLI DKTEADIPLN
WTVGEMHLHT KQVLAVAAHA TNFETKYFDL STTNWKDILR ASCAIPALHK QPVIMDKMEW
VDGGLTTPIP VQEAYDRGYR HIVVIRTVPV EFKENHDWMM KVAKMTKNAK LNQMAVMLMN
HEESYRKTQV FLANPPDDVT IYEISPNKNL ESKLLGSTKE QLDNDYQHGK DVGKLFLEVI
APKLNLEQAP QPHILVKTHE DRLKEENRKQ DYEDPIDKIW SNKTHGEVLG VDRIALKWIN
INVGEKKQTL VIVNGRNESY WKYKEAILEL SQYFNIYTYD HRGQGESGRI TQDHELGHVD
DFHDYVMDLY IFMEKVVRPN LEGECFMLSH SMGGAVTAQY LSKFDHPVTA SAATSPMFGV
YIPGKAYGLK TQTLNLLDVL ASKPNYALGQ SHFKKVEYDD NVLTHSKIRY QMFVELFENM
PNLRLGGPST HWITESIKAG KKCIAEAHKI KIPMLILQAG DDLVVSNVAQ RSFHENSHLC
HLETIPDSYH DMLIEDDKHR DIVLRKLINF FSSDYKFY
|
|---|
| |