| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1182 |
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| Symbol | vasF-1 |
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| ID | 6989380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1287108 |
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| End bp | 1288232 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643379558 |
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| Product | putative type VI secretion protein VasF-1 |
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| Protein accession | YP_002262657 |
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| Protein GI | 209694729 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.29093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAGTGAAT TATTTAATGA CGAAGCGACA ATAGAACTTC GTCATACTAA AGAAAAAATA
CCGGCAAAGA AAAAAAATGC AGAACTTAAG GATATAGATC TCTTAGGTGC AGAGTGGTTG
ATTGATAACC TCTCTGTTTA TAATAGCTCG TTATTGAATT CTGCAACTGA GCTATTTGCA
ATTTTGGTCA CTTTATCTCG TCAAGGCGAA CCGCGAGATA TAAATCGATT TAGGCAACGT
TTGTTGGATG AAATATCTGT ATTTCGCCAA CGTGGAGCAC ATCTTGAATA TCACCCAAGT
ATTATAGAAA AAAGTTGTTT TGTATTATGT GCCGCTTTTG ATGAAGCCAT TCTTTATACG
CAATGGGGGG AAAGTGCTCG TTGGGAAAAC CATTCATTAT TAAGTAAGGT TTTTTCTCAA
CGTAACGGGG GCGAAGCTTT TTTTACATTA TTGGATAAAG CGAGCCAACA GCCAGCAAAA
TTAGTAGATT TTTTAGAATT GCAATACGTT TTACTTATGT TGGGATTTAA AGGACGTTTC
CGTCACGATA ATGAAAATGT TTTACATGAA ATTCAATCAA ATGTGTATTC CATTATTCGT
CATTATCGCA GTGAATCTGT ATTACCTGTA CCAAAAATAC CAGAACTAAT TGAAGGTAAA
CAACCATGGT TAATGCTAAG TATGTCGAAA ACATTAGTGA TTGCTTTCTT TATCACAATC
ATAGTTTATG GTGCGTCAGA GTATTGGTAT TTTAATCGTA GCCAGCCAAT TCTTGCACAA
TTTAATGCTA TCAATACGTC TAGTGTAGGT AAGAAAAATA ACAAAGAATT AATTAATATT
AGTTCGGGTT CAGATATTGG GAAAATAGTT GATAATAGAA AACAAGAACT TAAAGAAACT
CTGCAATGGG AAGTTGTGCT TGCTGCATTT ACTCGTTCAT TAGATGCTGT GCGGTTGGTG
TCAGAATTAC AGCAAGCGGG GTATGAACCA TTCACACGAG AAACAGACCA TGGTGTCGAG
CTTTATATTA GAGCTGGAGA TAATTTATCG GTTATACGAA AGCTCAAAAA TGAATTAAAT
ATTCGCTTTG ACTTGAATGC TACGATTAAG AGAGCGCAGA TATAA
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| Protein sequence | MSELFNDEAT IELRHTKEKI PAKKKNAELK DIDLLGAEWL IDNLSVYNSS LLNSATELFA
ILVTLSRQGE PRDINRFRQR LLDEISVFRQ RGAHLEYHPS IIEKSCFVLC AAFDEAILYT
QWGESARWEN HSLLSKVFSQ RNGGEAFFTL LDKASQQPAK LVDFLELQYV LLMLGFKGRF
RHDNENVLHE IQSNVYSIIR HYRSESVLPV PKIPELIEGK QPWLMLSMSK TLVIAFFITI
IVYGASEYWY FNRSQPILAQ FNAINTSSVG KKNNKELINI SSGSDIGKIV DNRKQELKET
LQWEVVLAAF TRSLDAVRLV SELQQAGYEP FTRETDHGVE LYIRAGDNLS VIRKLKNELN
IRFDLNATIK RAQI
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