| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1181 |
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| Symbol | vasE-1 |
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| ID | 6989378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1285784 |
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| End bp | 1287100 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643379557 |
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| Product | putative type VI secretion protein VasE-1 |
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| Protein accession | YP_002262656 |
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| Protein GI | 209694728 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.100124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAATA AAAAAGTCGT TTGGAGTGAA GGAATGTTTC TTTCTCCGCA GCATTTTCAA
CAGCAAACAC GTTATATTGA ACATTTAACT CGTGAATTTA CAGAACAAAT TGCACCTCAA
GGAAGTGGAC TAACCTTACT TGAACTTGAT CGCTCTATGC TTAATATAGG TAAAGTTTCT
GTTCGTCGGG CAAGGGGGAT CTTTCAGGAT GGAACGCCAT TTGAAATTAA TCGTGGTCTT
GTTTTAGATA TACCTAAAAA TACAAATCAC AAAAAAGTAT ATCTTGCTTT ATCTGTATCA
CGACCTGGTG CGGTAGATGT TGGGGCCAAT CAGCATTTAC GTCATTCTTC TGTAGATCAT
CCAGTATTCG ATACTAGTCG TGAGCACTGT GAATCAGTAC TGCTAGAGAT TGCTGAGCTT
AATATTGTTT TAAAATTAGA AGATGAAGAG TTACAAGATT ACACTCTCAT ATCCGTTTGT
GAGGTAATTG AGCATAAATC AGAAGGTGCA GTACTTCTTA ATCAAGCTTT TGTACCGCAT
TGTTTGCAGT TTGGAGTATC TAATTATCTG AAAGATAGTG TGGCTGACGT TTTAGCCCAA
GTGCAGTATC GTGTAATGAC AATATCGACT CGACTGCAAA CTGAAAATGA CAGTAAAAGT
TATCAAGCGA TGATGCGTGA TTATTTATGG CTGCAAGCCT TAGGTGCTTG GATGCCTAAA
TTACAACAAT GGAATCAAGA TGGCAGCTTA TTAACTAAAC ACTTGTATTT AGAATGCCTG
TCAATGGCAG GTCAAATGCA AGGTCTTGAA GGAAAAATGC CTAAAGACTC TTTAGTGTGG
GATCAAAACA ACTTATACAG CATCTTTTCT GTGATTTTCT CTGAATTATT AGTGTTGTTA
CGTGAAGTTC AAATAGATAA CTTAACAACT TTATCATGGG ATAAGCAATT ATTTGTTTCT
CGACGTTTAC TCCGCACATT AGTTAAAGAT CGCAGTTTAT ATAATGAAGG ACGTTTTATT
CTGGTTGCTA CGTCCCCCTT AGGTGCATCG CGTCTTAGTG AAGAGTTTCC TAAAGCGATT
AAACTTGCAG GTAATAGTGA TATTGCGGGT TTAGTTCGTA ATGCCTTATC CGGTGTTGGG
TTACGAAACC TGCCTTATGC GCCTTCAGAG CTTAAATCTA AACACGATGC CGCGTATTTT
GAAATTGATA CTAAATCTGA ATTATGGCAA GCCTTAGTGA AAAATGATGA GCCTATCGCC
TTGCATATCG ACGACCGTAT CGAAGATGTT CACGTTGAAT TTCATGTAAT TAGGTAG
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| Protein sequence | MDNKKVVWSE GMFLSPQHFQ QQTRYIEHLT REFTEQIAPQ GSGLTLLELD RSMLNIGKVS
VRRARGIFQD GTPFEINRGL VLDIPKNTNH KKVYLALSVS RPGAVDVGAN QHLRHSSVDH
PVFDTSREHC ESVLLEIAEL NIVLKLEDEE LQDYTLISVC EVIEHKSEGA VLLNQAFVPH
CLQFGVSNYL KDSVADVLAQ VQYRVMTIST RLQTENDSKS YQAMMRDYLW LQALGAWMPK
LQQWNQDGSL LTKHLYLECL SMAGQMQGLE GKMPKDSLVW DQNNLYSIFS VIFSELLVLL
REVQIDNLTT LSWDKQLFVS RRLLRTLVKD RSLYNEGRFI LVATSPLGAS RLSEEFPKAI
KLAGNSDIAG LVRNALSGVG LRNLPYAPSE LKSKHDAAYF EIDTKSELWQ ALVKNDEPIA
LHIDDRIEDV HVEFHVIR
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