| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1175 |
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| Symbol | vasA-1 |
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| ID | 6989398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1278703 |
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| End bp | 1280484 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643379551 |
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| Product | putative type VI secretion protein VasA-1 |
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| Protein accession | YP_002262650 |
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| Protein GI | 209694722 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.64258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCTGATA CATTACTGAC ATATTTTGAA CAAGAACTGC GCTTTATTCG AGAGGAAGCG
TCGTATTTTT CAGCTCGTCA TCCGGGAGCT ACAGAAGCAC TCGGCATAAG AAAAGACAGT
ATTGATGATC CTCAAATTTC CCGTTTAATT GAAAGCGTGG CTTTTTTGAA TGGTAGATTA
CAACAGCGTT TAGACGATTC TTTTCCTGAA TTTACTGAAA GTCTTATTCG TTTACTTTTT
CCTCATTACT TACGTCCAAT TCCTTCGTAT AGCTTGCTTG ATTTTGTGGT TAATAATGAT
ACCAATGCCA CTCACCATAT TCCGTCAGGA ACAGAGTTTG AAGTGCGTGA TGAACAGATC
AATAGTGCCA TATTTCGTAC AACAGAAGAG GTAGCCCTTT ACCCTTTAAA AATAGAAAGA
GTTAACGTTT CTTTTGCTCC ATTTGAGTTA GAAAAACCAA AAGGTGCAGA ACAATCAAAT
GCTTTGATAG AAATATCGAT CTCTACGGTG GATGATACCG TTGTACTTTC TGAATTATTG
ATTGAATCAT TAAAGCTTCA TTTTAAAGGT GAAACCAACT TTGCATTGCG ATTGTTTGAT
CTTTTATCAC AAGGTACATC TCAAATTTGT GTCTCAGCAC AAGGTAAAAG CTATGAGCTA
AGTAGAAATG CAATGAAGCC TGTTGGTTTT GAGGTTAATG ATACGATTCT TCCTTATCAA
GCGGCGAGCT TTGGTGGCTT TAAGTTGTTA ACTGAATTCT TTATGTTTTC AGAGCGATTT
AATGGTTTTC ATTTTAATTT TGGTGATGTA TTAAAGCAGA TCGATAGTCA TCAATTTAAA
CTTCAAATAT TTATTGATGA ATTAAGTGTA GATTTTGCTA GAAGCTTATC TGCCGAACGT
TTTTCACTAT TTACCACACC GATAGTGAAT TTACATCAAA TGGTTTCAGA TCCGCTTGAC
GTTGATTTTT TTAAGAAACA ATACCCAATA ATACTTGATG CAAATCAAGG GCATAATTTA
GAGCTATTTT CAGTTGATGA AGTTATGGAT GTTACACAAG TAGAACCTAC CAAAATAGCT
CAAATTTATG GTGAAAAATT TAATGGTAGT GAATCAGGGT TGCGTTGGCA GTTAGTGCAG
ACTCTACATG AAAATGGTTT GTTAGAAAGT GCATTAAAAG TAGCTGATCT GGAGCATATT
AGTGCAGAAA GTGAATCTCA AACTTGGTTA GTGAATGCAA CGGTGACTGA TGGCATGGTA
ACGAGCCATT TATCATTATT AAGTGAAATT GAATGTCGTG AATCATTAAC TATTCCAGCA
GATATCCAGT TATTACGTCG ACCATCATTA CCTATGCGTA GTAAAGAAAC CAATAAAAAT
GTATGGACTT TACTGTGTCA TTTACATTTT AATTACCATT CTATTTTAGG CTCAGATGAT
CCTGTTGAAA CATTAAAAAA TGTATTTGAT TTATATAATC ATAATCAAAA CCCACAAAAT
TACGCTTATA TCGAATCTGT AACGACAATA GAGCAAGAAC AAGTAGTCGC TCCAATTCGA
ATATCAGGAA AAACATGTTT TGCTTACGGA ACGAAGATAA CAATCACTCT TGATCCTACT
AATGTGAATG GAGGGATCTG CTTGTTTGGC CATATTCTTG AACGCTTCTT TGCGTATTTT
GCAGGGTTTA ATAGTTTTAC TCAGGTAAAT ATTAAGTTGA AGGGACAAGA TGAGCTTTAT
ATGGCCTTTC CAAGGAGATC TGGATGCAAA ATTTTGTTGT AG
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| Protein sequence | MSDTLLTYFE QELRFIREEA SYFSARHPGA TEALGIRKDS IDDPQISRLI ESVAFLNGRL
QQRLDDSFPE FTESLIRLLF PHYLRPIPSY SLLDFVVNND TNATHHIPSG TEFEVRDEQI
NSAIFRTTEE VALYPLKIER VNVSFAPFEL EKPKGAEQSN ALIEISISTV DDTVVLSELL
IESLKLHFKG ETNFALRLFD LLSQGTSQIC VSAQGKSYEL SRNAMKPVGF EVNDTILPYQ
AASFGGFKLL TEFFMFSERF NGFHFNFGDV LKQIDSHQFK LQIFIDELSV DFARSLSAER
FSLFTTPIVN LHQMVSDPLD VDFFKKQYPI ILDANQGHNL ELFSVDEVMD VTQVEPTKIA
QIYGEKFNGS ESGLRWQLVQ TLHENGLLES ALKVADLEHI SAESESQTWL VNATVTDGMV
TSHLSLLSEI ECRESLTIPA DIQLLRRPSL PMRSKETNKN VWTLLCHLHF NYHSILGSDD
PVETLKNVFD LYNHNQNPQN YAYIESVTTI EQEQVVAPIR ISGKTCFAYG TKITITLDPT
NVNGGICLFG HILERFFAYF AGFNSFTQVN IKLKGQDELY MAFPRRSGCK ILL
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