| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1169 |
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| Symbol | vasJ-1 |
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| ID | 6989400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1272880 |
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| End bp | 1274265 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643379545 |
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| Product | putative type VI secretion protein VasJ-1 |
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| Protein accession | YP_002262644 |
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| Protein GI | 209694716 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.336401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTTTA CACAAAAAAA TATTTTAGAG TTTCAAACTC CTATTGCCGA GGATTTGATT
TGCGGAGTTT ATTTAAAATT AGATAAAGGG GCATTTCGTC CTCTGCGTAA TGAGTTTAAT
GTCGCTCAAA CATCTTTACG TAAACTTAGC CAGAACCCAA GCAGCCAAGA GTTGGAATCT
TTACAAGATG AGAATTATGA AAATTGGCAA GTGTTATCTA CTAGCTTAAT GACTACTTTT
GAAAATGTGA CGAGAGATAT TGAGTTAATT GGGTGGTTTA TTACTTCTCA AATTTTACTT
GATAACTCAC TTAGCAGCGT TGCATATTCA ATGAATTGGT TTGCTGAGTT ATTGGCAGAA
CAATGGGATT CCATTAATCC TGTATTGCCT GAAGAAAAGT TAAAAGGTGA TTCGGATACA
GGACGTTTAG TTGAGCAATA CGGCGCGAAA GTGAAAGCGT TTTTTCAGTT ACTCGGCGAT
AGTGAGGAAA GCAGTTTATT GTATACACCT TTGTTACTGC TGCCGCTTGT TGGTCACGTT
ACATTTTATG ATTTTCAAAG TGCAGAGCGT AAAGGCGAAT TAAGCCAACT CGAACAACAG
GCGACATCAT TAATTACTTT TGATCGTAAT GGTGTTCGAC AACGATTAGA AAGTGTGGCC
GATTGTCTTT TTCAAATTGA ACGTTTAATC ACTATTACTA AAACGTATGC TCAAATCGCA
GGTGTTAACG CTCCGAACTT TAATTTTGTG AAAACGTTGT TTACTAAATA TAACAATGCA
TTGCAGCAGT TATCGGGAAT GAAAGCTGAA GTTAAAGTGA CGAGTACAAG TCATAAAGAA
AAGCAACGTT TAATTAACCA ATCGGTAAAT ACTGAGACTT GTGGAGAAAA TGTTCTATTA
GTAGAAGCTG TTTCTCAAGC GAGTGATTCA TCTATACCGC TGAGACTAAC AGCAGATAAC
CTCTCGCAAG TAGGTTTAGC AAATAGTATG AATCGTGATT TAGCTTTTCA TTTACTTCGA
GAAGTATCTA GTTATTTCCG TCAGAGTGAG CCACATAGCC CTGTTTCTTT TTTACTAGAA
AAAGCGATTC GTTGGGGGTA CTTATCTCTA CCTGAGCTAT TACAAGAAAT GATGGTTGAA
CAGGATGGAG ATAATGTTAA TAAGATTTTT AATGCATCAG GATTAAACCA CTCTGAACAG
ATTCTTCTGC CAGAAGTCGG TATACCTCCT TGTGTCATTG AAAAGACTTT AACGTTTACT
GAGAGTTCTT CTTTTTCAGA GCCTGTAAAC ATTGAAGCTA AAGTAGCTCA AGTATCTATT
AATGATACTG AACTAAAACA AAATGAAGAT GAGTCATCTT CGAGGCCTAC AGCGCTTCGT
TGGTGA
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| Protein sequence | MRFTQKNILE FQTPIAEDLI CGVYLKLDKG AFRPLRNEFN VAQTSLRKLS QNPSSQELES
LQDENYENWQ VLSTSLMTTF ENVTRDIELI GWFITSQILL DNSLSSVAYS MNWFAELLAE
QWDSINPVLP EEKLKGDSDT GRLVEQYGAK VKAFFQLLGD SEESSLLYTP LLLLPLVGHV
TFYDFQSAER KGELSQLEQQ ATSLITFDRN GVRQRLESVA DCLFQIERLI TITKTYAQIA
GVNAPNFNFV KTLFTKYNNA LQQLSGMKAE VKVTSTSHKE KQRLINQSVN TETCGENVLL
VEAVSQASDS SIPLRLTADN LSQVGLANSM NRDLAFHLLR EVSSYFRQSE PHSPVSFLLE
KAIRWGYLSL PELLQEMMVE QDGDNVNKIF NASGLNHSEQ ILLPEVGIPP CVIEKTLTFT
ESSSFSEPVN IEAKVAQVSI NDTELKQNED ESSSRPTALR W
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