| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1164 |
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| Symbol | topA |
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| ID | 6986874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1266401 |
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| End bp | 1269040 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643379542 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002262641 |
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| Protein GI | 209694713 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.144967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAT CTCTAGTTAT CGTGGAGTCA CCAGCCAAAG CTAAAACTAT TAACAAATAC
CTTGGCAAAG ACTTCATCGT AAAATCCAGT GTAGGTCACG TTCGTGATTT GCCTATGGGT
TCGACAAGCA CCGGAAAGAA AACGGCGGCA GCGTCAACCA AAGGTATGAG TGTTGAAGAT
AAAGCACGCA TTAAGAAAGA AAGAGACAAG AAGAATCTGA TCAATAAAAT GGGGATTGAC
CCATATAACG ATTGGGCGGC GAATTACCAA ATTCTTCCTG GCAAAGAAAA AGTCGTAGCA
GAATTACAAA AACTGGCTGA AAATGCAGAC ACTATCTATC TCGCAACCGA TTTAGACCGT
GAAGGGGAAG CTATTGCGTG GCACCTTCGC GAGATCATCG GTGGTGATGA TTCACGCTAT
AAACGAGTAG TTTTTAACGA AATTACAAAA AATGCGATTC AACAAGCGTT TGAAACTCCA
GGCGAACTAA GTATGCCAGG GGTTAACGCA CAGCAAGCAC GTCGTTTCTT AGATCGTGTT
GTAGGCTTCA TGGCTTCTCC GCTATTGTGG AAAAAAGTGG CTCGTGGTTT GTCTGCGGGT
CGTGTTCAAT CCGTTGCCGT GAAAGTTTTG GTTGAGCGTG AGCGTGAAAT CAATGCCTTT
ATTCCTGAAG AGTTCTGGGA TATTCATGCA GATACACTGA CGTCTGGAAA AGAAAATTTC
CGTCTGCAAG TTGCACAGCG TAATGGTTCG GTATTTAAAC CACTGAATCA AGCGGATACA
GAATCAGCGG TAAGTATTCT TGAAAAAGCG GAATACGAAG TTTGTAAACG TGAAGACCGC
CCAACGAAAA GTAAGCCATC GGCACCTTAT ATCACGTCAA CACTGCAACA AGCAGCAAGT
ACACGCTTAG GTTACGGTGT GAAAAAGACC ATGATGCTAG CTCAGCGCCT CTATGAGGGC
GGTTACATCA CTTATATGCG TACTGACTCA ACTAACTTAA GTAAAGAAGC TGTAGAGACG
TTACGTGAGT TTATTGGTTC TGAGTATGGC GAGAGCTATT TACCGGCTGC TCCAATTATT
TATGGAAGCA AAGAAGGCGC ACAAGAAGCT CACGAAGCGA TTCGCCCTTC AAGTGTGGAT
GTGAAAGTAG ATGACCTGCA AGGTATGGAA GCCGACGCTC ATAAACTTTA CAACCTAATT
TGGAATCAAT TTGTGTCATG TCAAATGACG CCAGCACAAT ATGATTCAAC CACATTGAGC
GTAAAAGCCG ATGAATTCAC CTTAAAAGCG AAAGGTCGTA TCCTTAAGTT TGATGGTTGG
ACTCGCGTGC AACGTCCAAT GGGTAAAAAT GAAGATCAAT TGCTTCCTGC CGTTCAACTT
GGCGATAAGC TAAAACTAGA ACAGCTTGAT CCGAAACAAC ACTTTACTAA GCCACCAGCG
CGTTTCACAG AAGCCGCATT GGTTAAAGAA CTTGAGAAAA AAGGCATTGG TCGTCCATCG
ACTTACGCAT CAATCATCTC AACGATTCAA GACCGTGGCT ACGTTCGTGT TGAAAGCCGT
CGTTTCTATG CAGAAAAAAT GGGCGAAATT GTTACTGACC GTCTAAATCA ATCGTTTGAT
GATTTGATGG ATTACGATTT TACTGCTCGT ATGGAAGGCA ATTTGGATAA GATTGCTGAA
GGCAGCAAAG ATTGGAAAGA AGTGCTAAAT GCGTTCTTCC AAGACTTCAC TGACGATATA
GCAAAAGCTG AGCTTGATGA ATCAGAAGGC GGCATGTCAC CAAATAATAT CGTAGAAACT
GATATTAAAT GTCCGACGTG TGACCGTAAC ATGGGTATTC GTACTGCATC AACTGGGGTA
TTCCTTGGTT GTTCAGGTTA CGCATTACCG CCAAAAGAGC GCTGTAAGAA AACGATTAAC
TTAGGTAATG AAGAGGGCAT TATTAATGTT CTTGAAGAAG ACGTAGAAAC GGCCGCATTA
CGAGCCAAAA AACGTTGTCC TAAGTGTGAA ACAGCAATGG ATCCTTACCT AATCGATCAA
GATCGTAAAC TGCATGTTTG TGGTAATAAC CCGAACTGTG ATGGTTATAT TGTTGAGAAA
GGTGAGTTCC AACTTAAAGG CTATGATGGA CCCATTGTTG AGTGTGACAA ATGTGGTTCT
GATATGGAAC TTAAGAACGG TCGCTTTGGT AAATACATGG ATTGTACGAG TGAGACGTGT
AAAAACACAC GTAAGATCCT AAGAAATGGC GATGTTGCGC CACCAAAAGA AGATCCAGTA
CACCTTCCTG AATTGGAATG TGAAAAATCT GATGCGTACT TTGTGTTGCG TGATGGTGCA
TCTGGGTTAT TCTTAGCGGC AAGTACCTTC CCTAAATCGC GTGAAACACG AGCGCCATTA
GTGGAAGAGT TAGTTCGCTT TAAAGATCGT TTATCGCCTA AGTTTGTGTA CTTAACGGAA
GCGCCAACGC ACGATCCAGA CGGTAAACCA GCCGTAATTC GTTTTAGCCG TAAGACTAAA
GAAAATTACG TTCGTACTGA AACTGATGGT AAGCCATCAG GTTGGACGGC GTTATATCTT
GATGGGAAAT GGGCTGTTAC CGATAAGCGT AAAAAGCCAA AAGCTGAGAA AGAGTCTTAA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGKDFIVKSS VGHVRDLPMG STSTGKKTAA ASTKGMSVED
KARIKKERDK KNLINKMGID PYNDWAANYQ ILPGKEKVVA ELQKLAENAD TIYLATDLDR
EGEAIAWHLR EIIGGDDSRY KRVVFNEITK NAIQQAFETP GELSMPGVNA QQARRFLDRV
VGFMASPLLW KKVARGLSAG RVQSVAVKVL VEREREINAF IPEEFWDIHA DTLTSGKENF
RLQVAQRNGS VFKPLNQADT ESAVSILEKA EYEVCKREDR PTKSKPSAPY ITSTLQQAAS
TRLGYGVKKT MMLAQRLYEG GYITYMRTDS TNLSKEAVET LREFIGSEYG ESYLPAAPII
YGSKEGAQEA HEAIRPSSVD VKVDDLQGME ADAHKLYNLI WNQFVSCQMT PAQYDSTTLS
VKADEFTLKA KGRILKFDGW TRVQRPMGKN EDQLLPAVQL GDKLKLEQLD PKQHFTKPPA
RFTEAALVKE LEKKGIGRPS TYASIISTIQ DRGYVRVESR RFYAEKMGEI VTDRLNQSFD
DLMDYDFTAR MEGNLDKIAE GSKDWKEVLN AFFQDFTDDI AKAELDESEG GMSPNNIVET
DIKCPTCDRN MGIRTASTGV FLGCSGYALP PKERCKKTIN LGNEEGIINV LEEDVETAAL
RAKKRCPKCE TAMDPYLIDQ DRKLHVCGNN PNCDGYIVEK GEFQLKGYDG PIVECDKCGS
DMELKNGRFG KYMDCTSETC KNTRKILRNG DVAPPKEDPV HLPELECEKS DAYFVLRDGA
SGLFLAASTF PKSRETRAPL VEELVRFKDR LSPKFVYLTE APTHDPDGKP AVIRFSRKTK
ENYVRTETDG KPSGWTALYL DGKWAVTDKR KKPKAEKES
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