| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1151 |
|---|
| Symbol | trpC |
|---|
| ID | 6989327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1251897 |
|---|
| End bp | 1253309 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643379529 |
|---|
| Product | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
|---|
| Protein accession | YP_002262628 |
|---|
| Protein GI | 209694700 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0134] Indole-3-glycerol phosphate synthase
[COG0135] Phosphoribosylanthranilate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGC AACTGTCTGA GCATATCTCA GTAGAAAACA CACAAATGGC AGAAGTACTT
GTAAAGATCG TCAAGGACAA AGTCATTTGG GTTAGCGAAC GCAAAGAAAC TCAACCTCTT
GATTCGTTCC AAAATGGCTT AACGGCATCT GATCGCAGCT TTTACAAAGC ATTAAAAACA
GGCAACACTG AATTCATTCT TGAATGTAAA AAAGCCTCGC CATCTAAAGG GTTGATCCGT
CAAGATTTTG ATCTCAATTA CATCGCATCA GTGTATAACA ATCATGCCAG TGCAATCTCA
GTACTCACCG ATGAGAAGTA TTTCCAAGGC AGTTTTGATT TCTTGCCAAT CATTCGTGAC
CAAGTCAATC AACCAATTCT ATGCAAAGAC TTCATGATTG ACACTTATCA AGTTTATTTA
GCTCGTCACT ACGGCGCAGA TGCAATTCTA TTAATGCTTT CTGTTCTTGA TGATGAACAA
TACTGTGAAT TGGCGGCCGT CGCCCACTCT TTAAGTATGG GTATTTTAAC CGAAGTCAGT
AATGAAGAAG AGTTACATCG TGCAGTGGCA TTAGAAGCTC AGGTTATTGG TATTAATAAC
CGTAATCTTC GTGATTTATC TACCGACTTA AACCGTACCA AAGAATTAGC ACCTCTTCTC
CCTAAAGACA CAACCATCAT TTCTGAATCG GGGATTTACA ACCATCAGCA AGTGAAAGAC
TTAGCAAAGC ACGCGACAGG ATTTTTGATT GGCAGTTCAT TAATGTCGGA AGAAAACCTA
GAGCTTGCTG CACGAAAAGT TATTTTAGGG GAGAACAAAG TCTGTGGCCT AACGTCAATA
GAAGATGCGA AAGCGGTCTA TAACGCAGGC GCGGTGTATG GTGGATTAAT CTTTGTTGAG
AAATCACCTC GGTTTGTTTC TCTTGAAACA GCAAAAACCA TCACCCAAGC CACCACATTA
AACTATGTGG GTGTATTTCA AAATGAAACG CTTAAAAACA TCGTGAAGAC AGCAAATGAC
TTATCTTTGT CCGTCATTCA ACTTCATGGA AATGAGAGCG AAGATTACAT TACTGAACTA
AAACAACAAT TACCAACAAC ATGCCAAGTG TGGAATGTTA TTTCTGTGTC AGATGATGCC
CAAAGCATTT CACTTCCACA AAGTGTTGCT GATAAAGTAC TGGTAGATTG TAAGGTTGGT
TCTCAAACTG GAGGAACTGG TGTTAGTTTT GATTGGAATA AACTGCCACA CAATAACATC
ATTCTTGCCG GTGGATTAAG CCTTGAAAAT ACGAAAACAG CCTCACAATT AGGGTGCTTT
GGACTCGATT TCAACTCTGG AGTAGAAACG ACTCCAGGGA AAAAAGATCA TAAAAAATTA
AGCGCCGTAT TTAGCGCATT ACGAAATTAT TAA
|
|---|
| Protein sequence | MTQQLSEHIS VENTQMAEVL VKIVKDKVIW VSERKETQPL DSFQNGLTAS DRSFYKALKT
GNTEFILECK KASPSKGLIR QDFDLNYIAS VYNNHASAIS VLTDEKYFQG SFDFLPIIRD
QVNQPILCKD FMIDTYQVYL ARHYGADAIL LMLSVLDDEQ YCELAAVAHS LSMGILTEVS
NEEELHRAVA LEAQVIGINN RNLRDLSTDL NRTKELAPLL PKDTTIISES GIYNHQQVKD
LAKHATGFLI GSSLMSEENL ELAARKVILG ENKVCGLTSI EDAKAVYNAG AVYGGLIFVE
KSPRFVSLET AKTITQATTL NYVGVFQNET LKNIVKTAND LSLSVIQLHG NESEDYITEL
KQQLPTTCQV WNVISVSDDA QSISLPQSVA DKVLVDCKVG SQTGGTGVSF DWNKLPHNNI
ILAGGLSLEN TKTASQLGCF GLDFNSGVET TPGKKDHKKL SAVFSALRNY
|
|---|
| |