| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1123 |
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| Symbol | vasR |
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| ID | 6989397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1224773 |
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| End bp | 1226248 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643379503 |
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| Product | putative type VI secretion protein VasR |
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| Protein accession | YP_002262602 |
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| Protein GI | 209694674 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.34753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAA CAAGCACAGC CCAAGAAATA CAAAAAGAAA CAACGATAGG TCTCCTTGAT
CAAATCGTTG CTCAAACTAA TTTAACACCA GAGGATGAAA CCTATGGTAT TGCTAAACGT
GGCGTCAGCG CATTTATTCA AGAGCTATTG AAACCTCATA ATCAATCTGA GCCGGTTAAA
AAAGCATTAA TCGACAAAAT GATCACAGAA ATTGATCAGC GCTTGAGTAC TCAAGTTGAT
GAAATATTAC ATCACTCTTC ATTTCAGCAG CTTGAGTCTG CTTGGAGAGG ACTCAAGTTA
TTAGTAGATC GCACCGATTT TCGAGAGAAC ACAAAAATTG AAATCATCAA CATCTCTAAA
AAGGATCTAC TCGAAGATTT TGAAGATGCT TCTGACATCA CTCAATCCGG TTTATACAAA
CATGTCTATA CGAATGAATT TGGTACATTT GGTGGTCAAC CTGTCGGTGC TATTATTGGT
AATTATGATT TTGGCCCTTC TGCACCCGAT ATTAAAAATC TACAAAATGT GGCGGCTGTA
GCCGCAATGG CTCATGCCCC TTTTATTTCA GCGGCGGGTC CTAAATTTTT TGGATTAGAT
TCTTTTGAAG GGTTGCCTGA TCTCAAAGAT CTTAATGATC ATTTCGAAAG CCCACAATAT
GCAAAATGGC AGAGTTTTAG AGATCAAGAA GACGCCCGTT ACGTTGGGTT AACCTTACCA
CGCTTTTTAC TTCGTCAACC TTATGACCCT GAAGAAAACC CAGTAAAAAC ATTTAACTAC
CATGAGAATG TATCTGCAAC TCATGAAGAT TACCTATGGG GTAATACCGC GTTTACTATG
GCCTCTCGAG TCACTGAAAG CTTTGCTAAT TTCCGTTGGT GTCCAAATAT TATCGGCCCT
CAATCTGGTG GTACTGTTGA AGACCTTCCA TTGCATCATT TTGACAGCAT GGGAGATATC
GAAACAAAAA TACCCACTGA AGTTTTAGTG TCTGATCGCC GTGAATTCGA ACTAGCAGAA
GAAGGATTTA TCGCCTTAAC CATGCGTAAA GGTTCAGATA ATGCGGCTTT TTTCTCTGCT
AATTCGGTTC AAAAAGCCAA ATTATTTGGT AATTCTGAAG AAGGAAAAAG TGCAGAACTA
AATTACAGGT TGGGAACTCA ACTCCCTTAC TTATTTATTA TTAGCCGCTT AGCACATTAC
ATAAAAGTAC TACAACGAGA ACAAATTGGC AGCTGGAAAG AGCCTACCGA TCTTGAAAGA
GAATTGAATA CGTGGATAAG ACAATACATT ACTGATCAAG AAAATCCACC AGCAGAAGTG
AGAAGCCGTC GTCCATTACG CGCCGCAAGC ATTGAAGTTA TCGATGTTGA AGGAAGCCCT
GGTTGGTACA AAGTAAATTT ATCCGTTCGC CCTCATTTTA AATATATGGG TTCTGATTTT
ACTTTGTCAC TCGTTGGTAA GTTAGATCAA GAATAA
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| Protein sequence | MSETSTAQEI QKETTIGLLD QIVAQTNLTP EDETYGIAKR GVSAFIQELL KPHNQSEPVK
KALIDKMITE IDQRLSTQVD EILHHSSFQQ LESAWRGLKL LVDRTDFREN TKIEIINISK
KDLLEDFEDA SDITQSGLYK HVYTNEFGTF GGQPVGAIIG NYDFGPSAPD IKNLQNVAAV
AAMAHAPFIS AAGPKFFGLD SFEGLPDLKD LNDHFESPQY AKWQSFRDQE DARYVGLTLP
RFLLRQPYDP EENPVKTFNY HENVSATHED YLWGNTAFTM ASRVTESFAN FRWCPNIIGP
QSGGTVEDLP LHHFDSMGDI ETKIPTEVLV SDRREFELAE EGFIALTMRK GSDNAAFFSA
NSVQKAKLFG NSEEGKSAEL NYRLGTQLPY LFIISRLAHY IKVLQREQIG SWKEPTDLER
ELNTWIRQYI TDQENPPAEV RSRRPLRAAS IEVIDVEGSP GWYKVNLSVR PHFKYMGSDF
TLSLVGKLDQ E
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