Gene VSAL_I1122 details

Gene Information

• Locus tag: VSAL_I1122
• Symbol: vasS
• ID: 6989372
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1224260
• End bp: 1224685
• Gene Length: 426 bp
• Protein Length: 141 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 643379502
• Product: putative type VI secretion protein VasS
• Protein accession: YP_002262601
• Protein GI: 209694673
• COG category: [S] Function unknown
• COG ID: [COG3518] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03357] type VI secretion system lysozyme-related protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.111003
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTAAAC AACGATTATT TGAACGTTTA TTGGCCGGGA ATGTATCGAT GAATACGTCG 
GTATCAGTAA TGATATTAAC GGAGTCCATT AAAAATCACG TCACTCAATT ACTCTCAACA 
AGGCAAGGTG ACGCAAAAAT TCGTCCCGAT TTAGGTTTAC CAGATTTGAA TATCTCACAC 
ATGACGCCTC ATGATGCGAT TCTGCACATT AAAAGAGAGG TAGAACGTGT CATCTCACAG 
TACGAAACTC GAATCATCAA TACCAAAGTT AATTATTTAG GTAATATAAA CAGCCCTATT 
CATCTTTATT TTGAAATCAA TGGTGATATT TTATTAAATA ACCAACTAAC GCCTATTTCT 
TTTAATACTT ACGCTCAAAA AGTTAACACT AAGCCTTATA ACTATGAAAT TCAAGGCCTG 
GCATGA 

 

Protein sequence

MLKQRLFERL LAGNVSMNTS VSVMILTESI KNHVTQLLST RQGDAKIRPD LGLPDLNISH 
MTPHDAILHI KREVERVISQ YETRIINTKV NYLGNINSPI HLYFEINGDI LLNNQLTPIS 
FNTYAQKVNT KPYNYEIQGL A