| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1121 |
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| Symbol | vasA |
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| ID | 6989384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1222512 |
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| End bp | 1224263 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643379501 |
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| Product | putative type VI secretion protein VasA |
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| Protein accession | YP_002262600 |
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| Protein GI | 209694672 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0138508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTA ATACCTATTA TCAAACAGAA TTAGCGGCAT TGAGAGAGCT TGGAAAATCA
TTTTCAGAAG AAAATCCCGC CTTAGCCCCT TTTCTTGGAC AAGAAGGGTT AGATCCTGAT
ATTGAACGCT TATTTGAAGG TTTCGCTTTC TTAGTCGGTC GATTACATCA ACGTCTTGAT
AATCAATTAC CTGAGTTAAC ACATTCATTA ATGCGATTAC TTTGGCCTAA CTATGTTCAA
GCAATTCCCG CAATGAGTAC ATTGAAATTT ACACCGAATG CAGAAGCGAC TCAATGCTCA
ACTATCCCCC GAGGGACTAA AGTGAAAAGT CAGTTAATTG ATGGGGTTCA TTGTCAGTTC
AAAACCTGCT ATGACGTTGA GTTGTATCCA ATTAGTTTAC ATTCATCTTC CTTTACCGCG
AATGGAAATG GCGGGATCTA TCAACTACGA TTAGAATTAC CGACAGGCGT TGAATTACAT
TCTTTAAATA TGAATAAATT AAAAATTCAT TTTAATGGGG ATAAAGCCAG TAGTCTTTCA
TTAATCATGG CACTTTGCTC ATCCACTACT CAAGCCGAAT TTTGTGCATT AAATAGCGAT
AATGAGTTAA TTAATCGGTC TACCTTTCCA ACCAAGAGTA TCAAATCCGT TGGTTTTTCA
TCGCAAGAAG CATTATACGA TTATCCATTA AACACATTTG AAGGATACCG TCATATTCAA
GAATTCTTTT GCTATCCAGA AAAATATTAC TACATTGACT TAACTGAACT TCCTGTATGG
CCAGCTCAGT TTAGTCAAGG ATGTAAGTTC ATCGATATCA AATTTACCTT AGCTCACATT
ACTCAACAGC CTTTTTATGC TACTCGAATA CAACCGGCTC TTTTTTGCAC ACCCATTGTC
AATTTATTCA CAACGGATAC TCAACCGATT TTATTAAGTC ATAGAAAAGA TCAATATAAA
GTAACCCCAT CCTCTTTAAG TGACAGCAGC AGTACTATTT TATCCGTTGA AGAAGTGCAT
GGATGGACCC CGGGACAAAA AGGTCGCATT AATTTCTATC ATTTTGAATC TTTTGAACAT
AACGATACAA ATAAACACGC CAACTATTAC AGCATCAAAC AAGAAAAAAA CATTGTCAAT
GGTCACTTTG ATACATACTT ATCTTTTCGT TCATTAAATA CATTTTCAAA TAACATTACG
GTATCGATTA GCGTTACCGC ATGCAATGGA CAACTTGCAC AACGCTTATC CGTCGGCAGT
ATTACTCATG CAACGGAACA GACAACAGGA TCCGCTACCT TTTCAAATAT TCGCGCAGTC
ACGCCTTGTT ATACTCCGCC GATTGAAAAG GATGGGCTCT GGTCTTTGAT CTCCAATATG
TCTCTCAATT ACCTCTCATT AACAAAGCCA GAAGCATTTA AACGCATTTT ACTTGCCTAT
GATTTTGCAG GACAACAGGA CGACTCTAGA AGAAAAAAAC ATCGTCGATT AATTGATGGT
ATCAAACACA TCACAACAAA ACCTTCCGAT ATGCTTTATG AAGGTGCGCC TGTTCGAGCA
ATGAATACCC AATTATCACT TAACAGTAAG CACTTTTTAT GCGAAGGCGA ACTCTACTTG
TTTTCATCCG TAATTAATGA ATTTTTATCG CTATACACCA GCATGAACTC ATTCAATCAA
CTCAATGTGA CAAGTACTTA TGGAGGCGAC TATTCATGGC AACCACGAAT GGGGCAACAA
CCTCTAATTT AA
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| Protein sequence | MSFNTYYQTE LAALRELGKS FSEENPALAP FLGQEGLDPD IERLFEGFAF LVGRLHQRLD
NQLPELTHSL MRLLWPNYVQ AIPAMSTLKF TPNAEATQCS TIPRGTKVKS QLIDGVHCQF
KTCYDVELYP ISLHSSSFTA NGNGGIYQLR LELPTGVELH SLNMNKLKIH FNGDKASSLS
LIMALCSSTT QAEFCALNSD NELINRSTFP TKSIKSVGFS SQEALYDYPL NTFEGYRHIQ
EFFCYPEKYY YIDLTELPVW PAQFSQGCKF IDIKFTLAHI TQQPFYATRI QPALFCTPIV
NLFTTDTQPI LLSHRKDQYK VTPSSLSDSS STILSVEEVH GWTPGQKGRI NFYHFESFEH
NDTNKHANYY SIKQEKNIVN GHFDTYLSFR SLNTFSNNIT VSISVTACNG QLAQRLSVGS
ITHATEQTTG SATFSNIRAV TPCYTPPIEK DGLWSLISNM SLNYLSLTKP EAFKRILLAY
DFAGQQDDSR RKKHRRLIDG IKHITTKPSD MLYEGAPVRA MNTQLSLNSK HFLCEGELYL
FSSVINEFLS LYTSMNSFNQ LNVTSTYGGD YSWQPRMGQQ PLI
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