| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1117 |
|---|
| Symbol | vasC |
|---|
| ID | 6989377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1215928 |
|---|
| End bp | 1217289 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643379498 |
|---|
| Product | putative type VI secretion protein VasC |
|---|
| Protein accession | YP_002262597 |
|---|
| Protein GI | 209694669 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3456] Uncharacterized conserved protein, contains FHA domain |
|---|
| TIGRFAM ID | [TIGR03354] type VI secretion system FHA domain protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGATTA CCGACCTGTT GGCAATCCGG CACCACAAGA ACAAACAACT CTCGTTTCAG
AGGAGAAATA AAATGGAACT CGCCTTTGAT ATTATTCAAT CACAAGATTT ACCTATCGAT
ACCCTACCTA CTTTTACCTT TAAAAAGGCA GGAGGCACCA TTGGCCGTAG TCCCAATTCA
GATTGGTATA TCGCAGACAA TAAACGCCAA CTGTCGAATG TTCACGTATC CATAAGTTAT
GAAAATGATC AATTTTTCAT TTCAGACAGC AGCACAAACG GAACTTATCT TGATGGGCAA
GAGGCTTCAC TAAACAACGG GGAATTGCAC CCTGTTTCTC ATGGTGATAT TTACGAATTA
GGTTTAATAA AAATTCGAGC TCGCTTGCTA CAAGACCCAG AAAATTATAT TTCACCAAGC
CAAAACACGC TTGATTCTTC CTCAAATGAT GAGCAATCTG TCTTTAATAT GATCCCTGAC
GACAGTTTTT TAAGCAATGC GCCTATCGAA GAATTACTTA ACACCGATGA AGACATTATT
TTAAAACAAA TCGAAGATGC GGTACCCGCT CAATCTCAAA TGGACGATAC CTTACTTAAA
GAACAATTCA TTTCTCCCGT TTTATATGAT GACTTTGATG AAGAAAATGA TGCGGCCTCT
TATACCGGAG AAGAACAGAT AATAGAAGAC CCCATTTTTT CTACTCAAAC TAGATCTACG
GATAACCCAA TACCAGAATC TAAAGAAAAA ACGATAGAAA AAGAGAATAC TGCCGAACAA
TCTCAAGCCT ATTTAGCCGC GTTATCAAAA GGCCTAGGGA TTGAATTAAC CAATCTAGAA
GATCCAGAGC AAACATTATT TGATGTTGGT AGCGCATTAA GAAGTTCGAT CAATGGCATT
CAACAGCTTT TACGAACCCG AACTGAAATT AAAAATAAAC TCACCGCGAA TGCCACCACC
ATTCAGGCTC AGGGAAATAA CCCAATTAAG TTCAGCCATG ATGTCAATGA TGCCCTTAAT
GTCATTATTC ACCATAAACC CGGCTATTTA CAGGGGATTG AAGCCATAAA CCAAAGCTGT
AAAGACATAC AAGCCAACCA ACTCGCCATT CATGATGCTT GCCAACATAC CTTGGATGCA
CTCATAGAAA AGCTATCACC ACAGACATTA ACATATCGGT TTGTACAGGA TGGTATTCAA
ACAAAATTCA CAAAACCAGA CGCATTGTAC TGGCAAGCCT ATAAGAAACT GCATGAGCAA
ATAAGTCATG ATTCTGATTG GAGAAATGCC TTACTAGAGC AAGACTTTGC GAAACAATAC
GAATCTCAAC TGCAAATGTT ATCTGCCGCT TTACGCGTGT AA
|
|---|
| Protein sequence | MMITDLLAIR HHKNKQLSFQ RRNKMELAFD IIQSQDLPID TLPTFTFKKA GGTIGRSPNS
DWYIADNKRQ LSNVHVSISY ENDQFFISDS STNGTYLDGQ EASLNNGELH PVSHGDIYEL
GLIKIRARLL QDPENYISPS QNTLDSSSND EQSVFNMIPD DSFLSNAPIE ELLNTDEDII
LKQIEDAVPA QSQMDDTLLK EQFISPVLYD DFDEENDAAS YTGEEQIIED PIFSTQTRST
DNPIPESKEK TIEKENTAEQ SQAYLAALSK GLGIELTNLE DPEQTLFDVG SALRSSINGI
QQLLRTRTEI KNKLTANATT IQAQGNNPIK FSHDVNDALN VIIHHKPGYL QGIEAINQSC
KDIQANQLAI HDACQHTLDA LIEKLSPQTL TYRFVQDGIQ TKFTKPDALY WQAYKKLHEQ
ISHDSDWRNA LLEQDFAKQY ESQLQMLSAA LRV
|
|---|
| |