Gene VSAL_I1116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I1116 
SymbolvasD 
ID6989379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp1215406 
End bp1215894 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content38% 
IMG OID643379497 
Productputative type VI secretion protein VasD 
Protein accessionYP_002262596 
Protein GI209694668 
COG category[S] Function unknown 
COG ID[COG3521] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03352] type VI secretion lipoprotein, VC_A0113 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCGT TGTTCGCTTT ATTGACGATA TTAATGTTCA GTGGCTGTAG CAATACCCCT 
GAACCAACCT ACGTTGCATT AACCCTTAAT GCTTCGGCAA ATCTTAACCC TGATCATGTT
GATCGTCCAT CACCACTCGT TATCAGGATC ATTGAACTGT CATCAATCAC AAGTCTTGAG
AATGCCGAAT TCTTTGATTT ATACAACAAT GCAAAAGCCA ATTTAGGTCC TGATTTTATT
GCAGAAGAAG AAATAATCTT ACGTCCCGGC GATAAAAAGA TCATCAAACT AAAATTAAGT
GAAAAAGGAC AATACCTTGC TGTTATTGGC GCTTATCAAA ATATTGAAAG TGCCGATTGG
CGTTATATTT ATACCGTTGA ACCAGAAGAA GCTCAGAAAA TAGAATTGAT AGCGACGGAT
ACCTCTATTG TAAAGCTGGA GCGCGTAAAG AAAAAAAACA CAACCCCAGC TAATAACTCC
CACATTTAG
 
Protein sequence
MKSLFALLTI LMFSGCSNTP EPTYVALTLN ASANLNPDHV DRPSPLVIRI IELSSITSLE 
NAEFFDLYNN AKANLGPDFI AEEEIILRPG DKKIIKLKLS EKGQYLAVIG AYQNIESADW
RYIYTVEPEE AQKIELIATD TSIVKLERVK KKNTTPANNS HI