| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1115 |
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| Symbol | vasE |
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| ID | 6989381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1214072 |
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| End bp | 1215394 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643379496 |
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| Product | putative type VI secretion protein VasE |
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| Protein accession | YP_002262595 |
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| Protein GI | 209694667 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAAG TAATATGGAA TGAAGGCATG CTATTACGCC CTCAACATTT CCAGCAAAAT
GATCGTTATT ATAATCATCA ATTACAAACG AGAACCCAAC AGCAACACCG CTTCAATTGG
GGATTTCATT CTTTAAGTTT TGATAATCAC CACCTATCTG TGGGAAAAAT CGTGATAAAT
CAAGCCAGTG GTATTTTACC TGATGGTTCA TTATTTGATA TCCAGCACCA AGCAACGCCG
ATTATTTGGG AATCTGACGA ACCAAAAACA AACCTCACAT TATATTTGGC TTTATCTTTA
TCCACCGTGA ATAGTCCGGA AGCTCGTAGT GACAAAGAAG CAGGCATTAA CACTCGCTAT
CTTTCTTATG ATCTCACTAT TGCAGATAAC AACGCTCAAA TACAAAACTT ACAAACAATC
TCTTGTGGTG AATTAGATTT TCATATCATT ACAGAAGAAG AACTAGATAA TCACTGGGTA
AAATTGAAAC TCTGTGAAAT AAAACAAGTC ACTCCTGAAG GCGCAATACA GTTAAACCAA
AACTTTGAAG CGAGTTTCAT TAATGGTCAG CACTCTTCCT TGGTTCATCG CTCTTTGCGA
GAAGTATTAA CGTTAGTCAC TCATAAAGCT GACATTCTTG CAGAACGAAT TACTCAATCA
GGCCATGCGA CATCAGAGAT CGGGGATTTT TTATTACTTC AATTACTGAA TAAATACGAA
CCTCAATTGC ACTACTTAAA CCAATGCAAT CAATATCATC CAGAAGAGTT GTACTTATTA
CTTGCCACAC TACAAGGCGA ATTAGCAACC TATGATTCAG CTCAACGTCG TGCAGAGTTA
AGTCTTGCTT ATAACCATAA AGAACAAGGG GATTCCTTCG AACGCCTTCT TTTCCGTCTT
CGTAAACAAT TAAACCAATC ACTCAAACAA AATGCCTTTG AGATCCCACT TCAAAAACGT
AATCACGGCG TTCTCATTGC TCCGATTTCA GATACGAGCT TGTTACAAGA AGCCTCCTTT
ATTCTTGCCG CCCGTTCTCA TACGGATGCA GAAACGTTAC GTAAGCAGCT TCCTCCACAG
TTAAAAGTAG GCCCTGTTGA GAAAATTCGA AACTTAGTCA ACTTACAATT ACCAGGAATA
ACTTGCCGAT CGTTATCGGT CGCACCACGA CAAGTCCCTT TCCATGGCGA TTATTGTTAT
TTTACTCTTG ATTTGAATGC GAATGACCGA TCTCAATTAA CTCAATCAGG AGGTTTTGCG
TTCCATATCG CTGGAGATTT TCCAGAACTG TCCCTCTTTT TTTGGGCTAT AAGGAATAAA
TAA
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| Protein sequence | MQKVIWNEGM LLRPQHFQQN DRYYNHQLQT RTQQQHRFNW GFHSLSFDNH HLSVGKIVIN
QASGILPDGS LFDIQHQATP IIWESDEPKT NLTLYLALSL STVNSPEARS DKEAGINTRY
LSYDLTIADN NAQIQNLQTI SCGELDFHII TEEELDNHWV KLKLCEIKQV TPEGAIQLNQ
NFEASFINGQ HSSLVHRSLR EVLTLVTHKA DILAERITQS GHATSEIGDF LLLQLLNKYE
PQLHYLNQCN QYHPEELYLL LATLQGELAT YDSAQRRAEL SLAYNHKEQG DSFERLLFRL
RKQLNQSLKQ NAFEIPLQKR NHGVLIAPIS DTSLLQEASF ILAARSHTDA ETLRKQLPPQ
LKVGPVEKIR NLVNLQLPGI TCRSLSVAPR QVPFHGDYCY FTLDLNANDR SQLTQSGGFA
FHIAGDFPEL SLFFWAIRNK
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